magscope.beadlock

Classes

BeadLockManager

Abstract base class for processes in the MagScope

Module Contents

class magscope.beadlock.BeadLockManager

Bases: magscope.processes.ManagerProcessBase

Abstract base class for processes in the MagScope

Subclass requirements: * Each subclass should have a unique name. * There should only be one instance of each subclass (singleton). * The class name is used for consistent inter-process identification.

xy_lock_on: bool = False

xy_lock_interval: float

xy_lock_max: float

xy_lock_window: int

_xy_lock_last_time: float = 0.0

_xy_lock_global_cutoff: float = 0.0

_xy_lock_bead_cutoff: dict[int, float]

_xy_lock_pending_moves: list[int] = []

z_lock_on: bool = False

z_lock_bead: int = 0

z_lock_target: float | None = None

z_lock_interval: float

z_lock_max: float

z_lock_window: int

_z_lock_last_time: float = 0.0

_z_lock_global_cutoff: float = 0.0

_z_lock_expected_focus_target: float | None = None

_z_lock_last_focus_target: float | None = None

_focus_motor_name: str | None = None

_focus_buffer: magscope.datatypes.MatrixBuffer | None = None

setup()

do_main_loop()

do_xy_lock(now=None)

Centers the bead-rois based on their tracked position

do_z_lock(now=None)

_averaged_bead_z(bead_id: int, window: int) → float | None

_latest_focus_state() → tuple[float, float, bool] | None

_advance_z_lock_cutoff(now: float | None = None) → None

_update_z_lock_cutoff_for_external_focus_change(focus_state: tuple[float, float, bool], now: float) → None

_focus_matrix_buffer() → magscope.datatypes.MatrixBuffer | None

_discover_focus_motor_name() → str | None

refresh_bead_rois()

remove_bead_from_xy_lock_pending_moves(id: int)

remove_beads_from_xy_lock_pending_moves(ids: list[int])

set_xy_lock_on(value: bool)

set_xy_lock_interval(value: float)

set_xy_lock_max(value: float)

set_xy_lock_window(value: int)

set_z_lock_on(value: bool)

set_z_lock_bead(value: int)

set_z_lock_target(value: float)

set_z_lock_interval(value: float)

set_z_lock_max(value: float)

set_z_lock_window(value: int)