Index _ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z _ __call__() (magscope.processes.SingletonMeta method) (magscope.scripting.ScriptRegistry method) __del__() (magscope.camera.CameraBase method) (magscope.datatypes.BeadRoiBuffer method) (magscope.datatypes.MatrixBuffer method) (magscope.datatypes.VideoBuffer method) (magscope.datatypes.ZLUTSweepDataset method) __delitem__() (magscope.settings.MagScopeSettings method) __getitem__() (magscope.camera.CameraBase method) (magscope.settings.MagScopeSettings method) __iter__() (magscope.settings.MagScopeSettings method) __len__() (magscope.settings.MagScopeSettings method) __setitem__() (magscope.camera.CameraBase method) (magscope.settings.MagScopeSettings method) _accept_selection() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _accumulate_bilinear() (magscope.camera.DummyCameraBeads class method) _acquisition_dir (magscope.processes.ManagerProcessBase attribute) _acquisition_dir_on (magscope.processes.ManagerProcessBase attribute) _acquisition_mode (magscope.processes.ManagerProcessBase attribute) _acquisition_on (magscope.processes.ManagerProcessBase attribute) _active (magscope.zlut_generation.ZLUTGenerationManager attribute) _active_bead_graphic (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _active_bead_id (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _active_drag_count (magscope.ui.panel_layout.PanelLayoutManager attribute) _active_drag_height (magscope.ui.panel_layout.ReorderableColumn attribute) _active_request_id (magscope.ui.auto_bead_selection_dialog._AutoBeadSearchProcessBackend attribute) _active_search_request_id (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) _add_bead_roi() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _add_column() (magscope.ui.Controls method) (magscope.ui.ui.Controls method) _add_column_target (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) _add_metadata_row() (magscope.ui.controls.ZLUTPanel method) _add_new_bead_batch() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _add_task() (magscope.videoprocessing.VideoProcessorManager method) _advance_after_capture() (magscope.zlut_generation.ZLUTGenerationManager method) _advance_when_in_position() (magscope.zlut_generation.ZLUTGenerationManager method) _advance_z_lock_cutoff() (magscope.beadlock.BeadLockManager method) _animation_finished() (magscope.ui.CollapsibleGroupBox method) (magscope.ui.widgets.CollapsibleGroupBox method) _apply_auto_bead_selection() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _apply_collapsed_state() (magscope.ui.CollapsibleGroupBox method) (magscope.ui.widgets.CollapsibleGroupBox method) _apply_color() (magscope.ui.BeadGraphic method) (magscope.ui.widgets.BeadGraphic method) _apply_enabled_state() (magscope.ui.controls.HistogramPanel method) (magscope.ui.controls.ProfilePanel method) (magscope.ui.HistogramPanel method) _apply_history_window() (magscope.ui.AllanDeviationPanel static method) (magscope.ui.controls.AllanDeviationPanel static method) _apply_instruction_card_style() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _apply_logging_preferences() (magscope.scope.MagScope method) _apply_preferred_height() (magscope.ui.controls.ResponsivePlotCanvas method) _apply_styles() (magscope.ui.controls.HelpPanel method) (magscope.ui.controls.ResetPanel method) _apply_time_axis_format() (magscope.ui.plots.PlotWorker method) (magscope.ui.PlotWorker method) _attach_title_drag() (magscope.ui.panel_layout.PanelWrapper method) _auto_bead_selection_dialog (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _AutoBeadSearchProcessBackend (class in magscope.ui.auto_bead_selection_dialog) _averaged_bead_z() (magscope.beadlock.BeadLockManager method) _axis (magscope.python_microscope.PythonMicroscopeFocusMotor attribute) _background (magscope.camera.DummyCameraBeads attribute) _base_columns (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) _BEAD_ID_DTYPE (magscope.datatypes.ZLUTSweepDataset attribute) _bead_id_payload() (magscope.zlut_generation.ZLUTGenerationManager method) _bead_next_id (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _bead_roi_capacity (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _bead_roi_ids (magscope.processes.ManagerProcessBase attribute) _bead_roi_payload() (magscope.zlut_generation.ZLUTGenerationManager method) _bead_roi_values (magscope.processes.ManagerProcessBase attribute) _bead_rois (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _bead_size_px (magscope.camera.DummyCameraBeads attribute) _blit_add() (magscope.camera.DummyCameraBeads static method) _border_median() (magscope.camera.DummyCameraBeads static method) _broadcast_bead_roi_update() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _broadcast_zlut_metadata() (magscope.videoprocessing.VideoProcessorManager method) _buf (magscope.datatypes.MatrixBuffer attribute) (magscope.datatypes.VideoBuffer attribute) _buffer (magscope.datatypes.LiveProfileBuffer attribute) (magscope.hardware.HardwareManagerBase attribute) _build_generated_zluts() (magscope.zlut_generation.ZLUTGenerationManager method) _build_settings() (magscope.python_microscope.PythonMicroscopeCamera static method) _build_startup_splash_window() (in module magscope.startup_splash) _build_steps() (magscope.zlut_generation.ZLUTGenerationManager static method) _build_zlut_preview_payload() (magscope.ui.ui.UIManager static method) (magscope.ui.UIManager static method) _busy_count (magscope.videoprocessing.VideoWorker attribute) _cached_roi (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) _calculate_next_bead_id() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _camera_health_log_interval_seconds (magscope.scope.MagScope attribute) _can_start_auto_bead_selection() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _cancel_callback (magscope.ui.controls.ZLUTGenerationDialog attribute) _cancel_requested (magscope.zlut_generation.ZLUTGenerationManager attribute) _cancel_search() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _cancel_session() (magscope.zlut_generation.ZLUTGenerationManager method) _candidate_max_score (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) _candidate_min_score (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) _CANDIDATE_PROGRESS_UPDATE_INTERVAL (in module magscope.auto_bead_selection) _candidate_types (magscope.settings.SettingSpec property) _candidates (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) _centers_fixed (magscope.camera.DummyCameraBeads attribute) _centers_teth (magscope.camera.DummyCameraBeads attribute) _check_read() (magscope.datatypes.VideoBuffer method) _check_startup_splash_timeout() (magscope.scope.MagScope method) _check_write() (magscope.datatypes.VideoBuffer method) _cleanup_runtime_state() (magscope.zlut_generation.ZLUTGenerationManager method) _cleanup_shared_memory_segments() (magscope.datatypes.ZLUTSweepDataset method) _clear_live_profile_buffer() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _clear_pending_bead_add() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _clear_pending_profile_length_request() (magscope.zlut_generation.ZLUTGenerationManager method) _clear_seed_and_results() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _clear_zlut() (magscope.ui.controls.ZLUTPanel method) _clear_zlut_generation_preview() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _clear_zlut_state() (magscope.videoprocessing.VideoProcessorManager method) _close_callback (magscope.ui.controls.ZLUTGenerationDialog attribute) _close_when_canceled (magscope.ui.controls.ZLUTGenerationDialog attribute) _close_widget() (magscope.ui.ui.UIManager static method) (magscope.ui.UIManager static method) _closed (magscope.datatypes.ZLUTSweepDataset attribute) _coerce_bool_value() (magscope.ui.controls.TrackingOptionsPanel method) (magscope.ui.TrackingOptionsPanel method) _coerce_float_value() (magscope.ui.controls.TrackingOptionsPanel method) (magscope.ui.TrackingOptionsPanel method) _coerce_int_value() (magscope.ui.controls.TrackingOptionsPanel method) (magscope.ui.TrackingOptionsPanel method) _coerce_setting() (magscope.settings.MagScopeSettings method) _coerce_settings() (magscope.scope.MagScope method) _collect_handler_registrations() (in module magscope.ipc) _collect_processes() (magscope.scope.MagScope method) _collect_script_registrations() (magscope.scripting.ScriptRegistry static method) _collect_settings_from_inputs() (magscope.ui.controls.MagScopeSettingsPanel method) (magscope.ui.MagScopeSettingsPanel method) _color_state (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) _column_counter (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) _column_prefix (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) _column_scrolls (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) _columns_layout (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) _command_handlers (magscope.processes.ManagerProcessBase attribute) _command_registry (magscope.processes.ManagerProcessBase attribute) _command_registry_initialized (magscope.scope.MagScope attribute) _complete_session() (magscope.zlut_generation.ZLUTGenerationManager method) _completed_stacks (magscope.videoprocessing.VideoWorker attribute) _compute_highlight_rect() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) _configure_axes() (magscope.ui.AllanDeviationPanel method) (magscope.ui.controls.AllanDeviationPanel method) _configure_processes_with_shared_resources() (magscope.scope.MagScope method) _configure_threshold_slider() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _constrain_index() (magscope.ui.panel_layout.ReorderableColumn method) _constrained_drop_index() (magscope.ui.panel_layout.ReorderableColumn method) _context (magscope.ui.auto_bead_selection_dialog._AutoBeadSearchProcessBackend attribute) _controls (magscope.ui.ui.AddColumnDropTarget attribute) _corner_grip_rects() (magscope.ui.BeadGraphic method) (magscope.ui.widgets.BeadGraphic method) _correlate2d_valid_chunked() (in module magscope.auto_bead_selection) _create_brush() (magscope.ui.BeadGraphic static method) (magscope.ui.widgets.BeadGraphic static method) _create_dataset() (magscope.zlut_generation.ZLUTGenerationManager method) _create_instruction_card() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _create_pen() (magscope.ui.BeadGraphic static method) (magscope.ui.widgets.BeadGraphic static method) _create_search_backend() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _create_shared_buffers() (magscope.scope.MagScope method) _current_border_color() (magscope.ui.BeadGraphic method) (magscope.ui.widgets.BeadGraphic method) _current_image_display_scale() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _current_options (magscope.ui.controls.TrackingOptionsPanel attribute) (magscope.ui.TrackingOptionsPanel attribute) _current_pen_width() (magscope.ui.BeadGraphic method) (magscope.ui.widgets.BeadGraphic method) _current_scene_rect() (magscope.ui.BeadGraphic method) (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) (magscope.ui.widgets.BeadGraphic method) _current_settings (magscope.ui.controls.MagScopeSettingsPanel attribute) (magscope.ui.MagScopeSettingsPanel attribute) _current_step_capture_earliest_timestamp (magscope.zlut_generation.ZLUTGenerationManager attribute) _current_step_index (magscope.zlut_generation.ZLUTGenerationManager attribute) _current_step_profiles_written (magscope.zlut_generation.ZLUTGenerationManager attribute) _current_visible_scene_rect() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _current_visual_state() (magscope.ui.BeadGraphic method) (magscope.ui.widgets.BeadGraphic method) _current_zoom_percent() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) _dataset (magscope.zlut_generation.ZLUTGenerationManager attribute) _default_columns (magscope.ui.panel_layout.PanelLayoutManager attribute) _DEFAULT_CORRELATION_CHUNK_ROWS (in module magscope.auto_bead_selection) _default_order (magscope.ui.panel_layout.PanelLayoutManager attribute) _DEFAULT_TRACKING_OPTIONS (in module magscope.videoprocessing) _DEFAULTS (magscope.ui.controls.TrackingOptionsPanel attribute) (magscope.ui.TrackingOptionsPanel attribute) _delta_fixed (magscope.camera.DummyCameraBeads attribute) _delta_for_crop() (magscope.camera.DummyCameraBeads class method) _detach_zlut_sweep_dataset() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _disconnect_signal() (magscope.ui.ui.UIManager static method) (magscope.ui.UIManager static method) _discover_focus_motor_name() (magscope.beadlock.BeadLockManager method) (magscope.zlut_generation.ZLUTGenerationManager method) _dismiss_startup_splash_if_pending() (magscope.scope.MagScope method) _dispatch_mag_scope_command() (magscope.scope.MagScope method) _display_rate_counter (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _display_rate_last_rate (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _display_rate_last_time (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _display_scale (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) _dispose_matplotlib() (magscope.ui.controls.MatplotlibCleanupMixin method) _do_sleep() (magscope.scripting.ScriptManager method) _drag_active (magscope.ui.ui.AddColumnDropTarget attribute) _drag_filters (magscope.ui.panel_layout.PanelWrapper attribute) _drag_start (magscope.ui.panel_layout._TitleDragFilter attribute) _dragging (magscope.ui.panel_layout._TitleDragFilter attribute) _drain_child_pipes_after_quit() (magscope.scope.MagScope method) _drop_accepted (magscope.ui.panel_layout.PanelWrapper attribute) _drop_index() (magscope.ui.panel_layout.ReorderableColumn method) _edge_margin_px (magscope.camera.DummyCameraBeads attribute) _empty (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _ensure_not_terminated() (magscope.scope.MagScope method) _ensure_overlay_cache_pixmap() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) _ensure_placeholder() (magscope.ui.panel_layout.ReorderableColumn method) _ensure_shared_pens_and_brushes() (magscope.ui.BeadGraphic class method) (magscope.ui.widgets.BeadGraphic class method) _estimate_sampling_rate() (magscope.ui.AllanDeviationPanel static method) (magscope.ui.controls.AllanDeviationPanel static method) _evaluation_active (magscope.ui.controls.ZLUTGenerationDialog attribute) _execute_script_step() (magscope.scripting.ScriptManager method) _existing_rois (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) _extract_axis_series() (magscope.ui.AllanDeviationPanel static method) (magscope.ui.controls.AllanDeviationPanel static method) _extract_zlut_metadata() (magscope.videoprocessing.VideoProcessorManager static method) _fail_evaluation() (magscope.zlut_generation.ZLUTGenerationManager method) _fail_session() (magscope.zlut_generation.ZLUTGenerationManager method) _fail_startup() (magscope.zlut_generation.ZLUTGenerationManager method) _fake_image() (magscope.camera.DummyCameraNoise method) _fetch_count (magscope.python_microscope.PythonMicroscopeCamera attribute) _finish_waiting_when_ready() (magscope.videoprocessing.VideoProcessorManager method) _fit_scale (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _flash_progress (magscope.ui.widgets.FlashLabel attribute) _focus_buffer (magscope.beadlock.BeadLockManager attribute) (magscope.zlut_generation.ZLUTGenerationManager attribute) _focus_matrix_buffer() (magscope.beadlock.BeadLockManager method) _focus_motor_name (magscope.beadlock.BeadLockManager attribute) (magscope.zlut_generation.ZLUTGenerationManager attribute) _focus_offset (magscope.camera.DummyCameraBeads attribute) _format_last_update_text() (magscope.ui.CameraPanel method) (magscope.ui.controls.CameraPanel method) _format_last_updated_text() (magscope.ui.controls.MagScopeSettingsPanel method) (magscope.ui.controls.TrackingOptionsPanel method) (magscope.ui.MagScopeSettingsPanel method) (magscope.ui.TrackingOptionsPanel method) _format_number() (magscope.ui.controls.ZLUTPanel static method) _format_script_step() (magscope.scripting.ScriptManager static method) _fps_estimate (magscope.python_microscope.PythonMicroscopeCamera attribute) _fps_window_start (magscope.python_microscope.PythonMicroscopeCamera attribute) _from_device_units() (magscope.python_microscope.PythonMicroscopeFocusMotor method) _generate_column_name() (magscope.ui.Controls method) (magscope.ui.ui.Controls method) _generated_zluts (magscope.zlut_generation.ZLUTGenerationManager attribute) _get_bead_highlight_state() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _get_count_index() (magscope.datatypes.MatrixBuffer method) (magscope.datatypes.VideoBuffer method) _get_read_index() (magscope.datatypes.MatrixBuffer method) (magscope.datatypes.VideoBuffer method) _get_static_label() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) _get_timestamps() (magscope.datatypes.VideoBuffer method) _get_toggle_text() (magscope.ui.CollapsibleGroupBox static method) (magscope.ui.widgets.CollapsibleGroupBox static method) _get_write_index() (magscope.datatypes.MatrixBuffer method) (magscope.datatypes.VideoBuffer method) _gpu_lock (magscope.videoprocessing.VideoProcessorManager attribute) (magscope.videoprocessing.VideoWorker attribute) _grab_frame() (magscope.python_microscope.PythonMicroscopeCamera static method) _groupbox_toggled() (magscope.ui.controls.HistogramPanel method) (magscope.ui.controls.ProfilePanel method) (magscope.ui.HistogramPanel method) _handle_bead_selection_changed() (magscope.ui.controls.ZLUTGenerationDialog method) _handle_broadcast_command() (magscope.scope.MagScope method) _handle_cancel_clicked() (magscope.ui.controls.ZLUTGenerationDialog method) _handle_close_clicked() (magscope.ui.controls.ZLUTGenerationDialog method) _handle_save_and_load_clicked() (magscope.ui.controls.ZLUTGenerationDialog method) _handle_save_clicked() (magscope.ui.controls.ZLUTGenerationDialog method) _handle_script_error() (magscope.scripting.ScriptManager method) _handle_timer_exception() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _handle_zlut_dialog_destroyed() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _handler_index (magscope.ipc.CommandRegistry attribute) _hardware (magscope.scope.MagScope attribute) _hardware_buffers (magscope.scope.MagScope attribute) _hardware_save_filepath() (magscope.hardware.HardwareManagerBase method) _hardware_save_header() (magscope.hardware.HardwareManagerBase method) _height_for_width (magscope.ui.controls.ResponsivePlotCanvas attribute) _hit_test_bead() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _idx_buf (magscope.datatypes.MatrixBuffer attribute) (magscope.datatypes.VideoBuffer attribute) _idx_shm (magscope.datatypes.MatrixBuffer attribute) (magscope.datatypes.VideoBuffer attribute) _image (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) (magscope.ui.controls.ZLUTSweepPreviewWidget attribute) (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _image_to_pixmap() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _increment_version() (magscope.datatypes.BeadRoiBuffer method) _info_fields (magscope.datatypes.BeadRoiBuffer attribute) _INFO_FIELDS (magscope.datatypes.ZLUTSweepDataset attribute) _info_size (magscope.datatypes.BeadRoiBuffer attribute) _INFO_SIZE (magscope.datatypes.ZLUTSweepDataset attribute) _init_matplotlib_cleanup() (magscope.ui.controls.MatplotlibCleanupMixin method) _init_tether_state() (magscope.camera.DummyCameraBeads method) _initialize_shared_state() (magscope.scope.MagScope method) _initializing (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) _instances (magscope.processes.SingletonMeta attribute) _invalidate_overlay_view_cache() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) _is_connected (magscope.hardware.HardwareManagerBase attribute) _is_hovered (magscope.ui.BeadGraphic attribute) (magscope.ui.controls.HelpPanel attribute) (magscope.ui.controls.ResetPanel attribute) (magscope.ui.widgets.BeadGraphic attribute) _is_moving (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) _is_running (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) _issue_move_for_current_step() (magscope.zlut_generation.ZLUTGenerationManager method) _join_processes() (magscope.scope.MagScope method) _label_ascent (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _label_metrics (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _last_applied_roi (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _last_camera_health_frame_count (magscope.scope.MagScope attribute) _last_camera_health_sample_time (magscope.scope.MagScope attribute) _last_fetch_time (magscope.python_microscope.PythonMicroscopeCamera attribute) _last_options_update (magscope.ui.controls.TrackingOptionsPanel attribute) (magscope.ui.TrackingOptionsPanel attribute) _last_progress_emit (magscope.zlut_generation.ZLUTGenerationManager attribute) _last_sent_focus (magscope.hardware.FocusMotorBase attribute) _last_settings_update (magscope.ui.CameraPanel attribute) (magscope.ui.controls.CameraPanel attribute) (magscope.ui.controls.MagScopeSettingsPanel attribute) (magscope.ui.MagScopeSettingsPanel attribute) _last_state (magscope.hardware.FocusMotorBase attribute) _last_written (magscope.hardware.FocusMotorBase attribute) _latest_focus_state() (magscope.beadlock.BeadLockManager method) (magscope.zlut_generation.ZLUTGenerationManager method) _layout (magscope.ui.panel_layout.ReorderableColumn attribute) _layout_insert_index() (magscope.ui.Controls method) (magscope.ui.ui.Controls method) _layout_minimap() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) _live_profile_bead (magscope.videoprocessing.VideoWorker attribute) _live_profile_enabled (magscope.videoprocessing.VideoWorker attribute) _load_default_zlut() (magscope.videoprocessing.VideoProcessorManager method) _load_defaults() (magscope.settings.MagScopeSettings class method) _load_layout() (magscope.ui.panel_layout.PanelLayoutManager method) _load_logo_pixmap() (in module magscope.startup_splash) _load_options_from_mapping() (magscope.ui.controls.TrackingOptionsPanel method) (magscope.ui.TrackingOptionsPanel method) _load_qsettings_values() (magscope.settings.MagScopeSettings method) _load_setting() (magscope.ui.AllanDeviationPanel method) (magscope.ui.controls.AllanDeviationPanel method) _locked (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) _locked_prefix_length() (magscope.ui.panel_layout.ReorderableColumn method) _locks (magscope.videoprocessing.VideoWorker attribute) _log_camera_health_if_due() (magscope.scope.MagScope method) _log_level (magscope.scope.MagScope attribute) _LOOKUP_Z_PROFILE_WARNING (in module magscope.videoprocessing) _lookup_z_warning_reported (magscope.videoprocessing.VideoProcessorManager attribute) _magscope_quitting (magscope.processes.ManagerProcessBase attribute) _main_ipc_loop() (magscope.scope.MagScope method) _main_loop_tick() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _manager (magscope.ui.panel_layout.PanelWrapper attribute) (magscope.ui.panel_layout.ReorderableColumn attribute) _mark_blocked_roi() (in module magscope.auto_bead_selection) _mark_running() (magscope.scope.MagScope method) _mark_terminated() (magscope.scope.MagScope method) _marker_size (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _marker_x (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _marker_y (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _maximum_height (magscope.ui.controls.ResponsivePlotCanvas attribute) _maybe_schedule_startup_ready() (magscope.ui.ui._StartupReadyWindow method) _maybe_send_progress() (magscope.zlut_generation.ZLUTGenerationManager method) _metadata_layout (magscope.ui.controls.ZLUTPanel attribute) _methods (magscope.scripting.ScriptRegistry attribute) _MIN_CANDIDATE_SCORE (in module magscope.auto_bead_selection) _min_sep_px (magscope.camera.DummyCameraBeads attribute) _minimap_base (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _MINIMAP_BUTTON_SPACING (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _minimap_label (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _MINIMAP_LABEL_SPACING (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _MINIMAP_MARGIN (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _MINIMAP_MAX_SIZE (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _MINIMAP_MIN_SIZE (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _minimap_reset_button (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _MINIMAP_ZOOM_HEIGHT (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _minimap_zoom_label (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _minimum_height (magscope.ui.controls.ResponsivePlotCanvas attribute) _MOTOR_Z_DTYPE (magscope.datatypes.ZLUTSweepDataset attribute) _mouse_start_pos (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _mouse_start_time (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _moving_target (magscope.python_microscope.PythonMicroscopeFocusMotor attribute) _n_windows (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _n_workers (magscope.videoprocessing.VideoProcessorManager attribute) _next_camera_health_log_deadline (magscope.scope.MagScope attribute) _next_random_bead_roi() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _next_search_request_id (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) _NO_ACTIVE_REQUEST_ID (magscope.ui.auto_bead_selection_dialog._AutoBeadSearchProcessBackend attribute) _normalise_panel_list() (magscope.ui.panel_layout.PanelLayoutManager method) _normalize_bead_id() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _normalize_bead_mapping() (magscope.datatypes.BeadRoiBuffer method) _normalize_ids() (magscope.datatypes.BeadRoiBuffer method) _notify() (magscope.ui.controls.MagScopeSettingsPanel method) (magscope.ui.MagScopeSettingsPanel method) _notify_lookup_profile_warning() (magscope.videoprocessing.VideoWorker method) _notify_startup_ready() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _notify_zlut_error() (magscope.videoprocessing.VideoProcessorManager method) _occupancy (magscope.datatypes.BeadRoiBuffer attribute) _occupancy_dtype (magscope.datatypes.BeadRoiBuffer attribute) _occupancy_nbytes (magscope.datatypes.BeadRoiBuffer attribute) _on_apply_clicked() (magscope.ui.controls.MagScopeSettingsPanel method) (magscope.ui.MagScopeSettingsPanel method) _on_auto_bead_selection_dialog_finished() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _on_defaults_clicked() (magscope.ui.controls.MagScopeSettingsPanel method) (magscope.ui.MagScopeSettingsPanel method) _on_drag_active_changed (magscope.ui.panel_layout.PanelLayoutManager attribute) _on_drag_active_changed() (magscope.ui.Controls method) (magscope.ui.ui.Controls method) _on_layout_changed (magscope.ui.panel_layout.PanelLayoutManager attribute) _on_layout_changed() (magscope.ui.Controls method) (magscope.ui.ui.Controls method) _on_load_clicked() (magscope.ui.controls.MagScopeSettingsPanel method) (magscope.ui.controls.TrackingOptionsPanel method) (magscope.ui.MagScopeSettingsPanel method) (magscope.ui.TrackingOptionsPanel method) _on_ready (magscope.ui.ui._StartupReadyWindow attribute) _on_save_clicked() (magscope.ui.controls.MagScopeSettingsPanel method) (magscope.ui.controls.TrackingOptionsPanel method) (magscope.ui.MagScopeSettingsPanel method) (magscope.ui.TrackingOptionsPanel method) _on_scene_clicked() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _on_search_canceled() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _on_search_failed() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _on_search_finished() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _on_search_progress_changed() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _ones_kernel() (in module magscope.auto_bead_selection) _ou_step() (magscope.camera.DummyCameraBeads static method) _overlay_cache_device_pixel_ratio (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _overlay_cache_dirty (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _overlay_cache_pixmap (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _overlay_cache_size (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _overlay_entries (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _owns_shared_memory (magscope.datatypes.ZLUTSweepDataset attribute) _paint_rect() (magscope.ui.BeadGraphic method) (magscope.ui.widgets.BeadGraphic method) _parent (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) _parse_float() (magscope.ui.controls.TrackingOptionsPanel method) (magscope.ui.TrackingOptionsPanel method) _parse_int() (magscope.ui.controls.TrackingOptionsPanel method) (magscope.ui.TrackingOptionsPanel method) _parse_window_seconds() (magscope.ui.AllanDeviationPanel static method) (magscope.ui.controls.AllanDeviationPanel static method) _pending_bead_add_id (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _pending_bead_add_roi (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _pending_profile_length_request (magscope.videoprocessing.VideoProcessorManager attribute) _pending_start_request (magscope.zlut_generation.ZLUTGenerationManager attribute) _pending_zlut_profile_length_request (magscope.videoprocessing.VideoProcessorManager attribute) _persist_controls() (magscope.ui.AllanDeviationPanel method) (magscope.ui.controls.AllanDeviationPanel method) _persistence_enabled (magscope.settings.MagScopeSettings attribute) _persistence_listeners (magscope.settings.MagScopeSettings attribute) _phase (magscope.zlut_generation.ZLUTGenerationManager attribute) _pinned_ids (magscope.ui.panel_layout.ReorderableColumn attribute) _pipe (magscope.processes.ManagerProcessBase attribute) _placeholder (magscope.ui.panel_layout.ReorderableColumn attribute) _placeholder_index() (magscope.ui.panel_layout.ReorderableColumn method) _poll_hardware() (magscope.hardware.FocusMotorBase method) _poll_search_backend() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _populate_inputs_from_options() (magscope.ui.controls.TrackingOptionsPanel method) (magscope.ui.TrackingOptionsPanel method) _preferred_height (magscope.ui.controls.ResponsivePlotCanvas attribute) _prepare_session() (magscope.zlut_generation.ZLUTGenerationManager method) _pressed (magscope.ui.widgets.GripHandle attribute) _preview_cmap (magscope.ui.controls.ZLUTSweepPreviewWidget attribute) _previous_acquisition_on (magscope.zlut_generation.ZLUTGenerationManager attribute) _print_ipc_commands (magscope.scope.MagScope attribute) _print_script_commands (magscope.scope.MagScope attribute) _process (magscope.ui.auto_bead_selection_dialog._AutoBeadSearchProcessBackend attribute) _process_command() (magscope.scope.MagScope method) _process_profile_length_reports() (magscope.videoprocessing.VideoProcessorManager method) _process_worker_warnings() (magscope.videoprocessing.VideoProcessorManager method) _process_zlut_capture_reports() (magscope.videoprocessing.VideoProcessorManager method) _process_zlut_profile_length_reports() (magscope.videoprocessing.VideoProcessorManager method) _PROFILE_DTYPE (magscope.datatypes.ZLUTSweepDataset attribute) _profile_length (magscope.zlut_generation.ZLUTGenerationManager attribute) _profile_length_queue (magscope.videoprocessing.VideoProcessorManager attribute) (magscope.videoprocessing.VideoWorker attribute) _profiles_per_bead (magscope.zlut_generation.ZLUTGenerationManager attribute) _prune_empty_columns() (magscope.ui.Controls method) (magscope.ui.ui.Controls method) _purge_buffers() (magscope.camera.CameraManager method) _push_settings() (magscope.ui.controls.MagScopeSettingsPanel method) (magscope.ui.MagScopeSettingsPanel method) _qsettings() (magscope.settings.MagScopeSettings class method) _QSETTINGS_APPLICATION (magscope.settings.MagScopeSettings attribute) _QSETTINGS_GROUP (magscope.settings.MagScopeSettings attribute) _QSETTINGS_ORGANIZATION (magscope.settings.MagScopeSettings attribute) _quit_requested (magscope.processes.ManagerProcessBase attribute) _quitting (magscope.processes.ManagerProcessBase attribute) (magscope.scope.MagScope attribute) _radius_nm (magscope.camera.DummyCameraBeads attribute) _read_command() (magscope.scope.MagScope method) _read_info() (magscope.datatypes.BeadRoiBuffer method) (magscope.datatypes.ZLUTSweepDataset method) _read_zlut_preview_snapshot() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _readout_transform (magscope.python_microscope.PythonMicroscopeCamera attribute) _rebuild_overlay_cache_pixmap() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) _rebuild_overlay_view_cache() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) _recompute_fixed_delta() (magscope.camera.DummyCameraBeads method) _recreate_figure_if_needed() (magscope.ui.plots.PlotWorker method) (magscope.ui.PlotWorker method) _refresh_bead_overlay() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _refresh_bead_roi_cache() (magscope.processes.ManagerProcessBase method) _refresh_fields() (magscope.ui.controls.MagScopeSettingsPanel method) (magscope.ui.MagScopeSettingsPanel method) _refresh_minimap() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) _refresh_visible_candidates() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _refresh_zlut_preview_from_dataset() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _register_drag_source() (magscope.ui.panel_layout.PanelWrapper method) _register_script_methods() (magscope.scope.MagScope method) _reinit_centers_and_fixed() (magscope.camera.DummyCameraBeads method) _release_completed_pool_buffers() (magscope.camera.CameraManager method) _release_reserved_processing_stack() (magscope.videoprocessing.VideoProcessorManager method) _release_reserved_stack_if_pending() (magscope.videoprocessing.VideoWorker method) _release_stack() (magscope.videoprocessing.VideoWorker method) _release_unattached_buffers() (magscope.camera.CameraManager method) _released_completed_stacks (magscope.camera.CameraManager attribute) _remove_bead_roi() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _remove_column() (magscope.ui.Controls method) (magscope.ui.ui.Controls method) _report_exception() (magscope.processes.ManagerProcessBase method) _report_zlut_capture_task_failure() (magscope.videoprocessing.VideoWorker method) _report_zlut_capture_task_retry() (magscope.videoprocessing.VideoWorker method) _request_queue (magscope.ui.auto_bead_selection_dialog._AutoBeadSearchProcessBackend attribute) _requested_range (magscope.zlut_generation.ZLUTGenerationManager attribute) _require_axis() (magscope.python_microscope.PythonMicroscopeFocusMotor method) _reserved_stacks (magscope.videoprocessing.VideoWorker attribute) _reset_camera_health_logging_state() (magscope.scope.MagScope method) _reset_dataset() (magscope.zlut_generation.ZLUTGenerationManager method) _reset_search_results() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _reset_singleton_for_testing() (magscope.scope.MagScope class method) _resolve_axis() (magscope.python_microscope.PythonMicroscopeFocusMotor method) _result_queue (magscope.ui.auto_bead_selection_dialog._AutoBeadSearchProcessBackend attribute) _rng (magscope.camera.DummyCameraBeads attribute) _roi_dtype (magscope.datatypes.BeadRoiBuffer attribute) _roi_matrix (magscope.datatypes.BeadRoiBuffer attribute) _roi_nbytes (magscope.datatypes.BeadRoiBuffer attribute) _roi_shape (magscope.datatypes.BeadRoiBuffer attribute) _roi_size (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) _ROOT_LOGGER_NAME (in module magscope._logging) _route_command() (magscope.scope.MagScope method) _run_safe() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _running (magscope.processes.ManagerProcessBase attribute) (magscope.scope.MagScope attribute) (magscope.ui.controls.ZLUTGenerationDialog attribute) _sample_points_uniform_minsep() (magscope.camera.DummyCameraBeads static method) _save_and_load_callback (magscope.ui.controls.ZLUTGenerationDialog attribute) _save_callback (magscope.ui.controls.ZLUTGenerationDialog attribute) _save_pending_data_if_enabled() (magscope.hardware.HardwareManagerBase method) _save_profiles (magscope.videoprocessing.VideoProcessorManager attribute) _SCHEMA_VERSION (magscope.datatypes.ZLUTSweepDataset attribute) _score_map (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) _score_to_slider_value() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _script (magscope.scripting.ScriptManager attribute) _script_index (magscope.scripting.ScriptManager attribute) _script_length (magscope.scripting.ScriptManager attribute) _script_sleep_duration (magscope.scripting.ScriptManager attribute) _script_sleep_start (magscope.scripting.ScriptManager attribute) _script_status (magscope.scripting.ScriptManager attribute) _script_waiting (magscope.scripting.ScriptManager attribute) _search_backend (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) _search_in_progress (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) _search_poll_timer (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) _seed_roi (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) _SEGMENT_SUFFIXES (magscope.datatypes.ZLUTSweepDataset attribute) _select_bead_callback (magscope.ui.controls.ZLUTGenerationDialog attribute) _select_zlut_file() (magscope.ui.controls.ZLUTPanel method) _selected_bead_id (magscope.ui.controls.ZLUTGenerationDialog attribute) (magscope.zlut_generation.ZLUTGenerationManager attribute) _send_evaluation_state() (magscope.zlut_generation.ZLUTGenerationManager method) _send_progress() (magscope.zlut_generation.ZLUTGenerationManager method) _send_script_step_update() (magscope.scripting.ScriptManager method) _send_state() (magscope.zlut_generation.ZLUTGenerationManager method) _session_bead_roi_ids (magscope.zlut_generation.ZLUTGenerationManager attribute) _session_bead_roi_values (magscope.zlut_generation.ZLUTGenerationManager attribute) _set_active() (magscope.ui.ui.AddColumnDropTarget method) _set_active_bead() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _set_count_index() (magscope.datatypes.MatrixBuffer method) (magscope.datatypes.VideoBuffer method) _set_instruction_cards_state() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _set_limits() (magscope.ui.plots.PlotWorker method) (magscope.ui.PlotWorker method) _set_options() (magscope.ui.controls.TrackingOptionsPanel method) (magscope.ui.TrackingOptionsPanel method) _set_plot_image() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _set_read_index() (magscope.datatypes.MatrixBuffer method) (magscope.datatypes.VideoBuffer method) _set_reference_bead() (magscope.ui.plots.PlotWorker method) (magscope.ui.PlotWorker method) _set_relative_window() (magscope.ui.plots.PlotWorker method) (magscope.ui.PlotWorker method) _set_script_status() (magscope.scripting.ScriptManager method) _set_search_ui_state() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _set_seed_roi() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _set_selected_bead() (magscope.ui.plots.PlotWorker method) (magscope.ui.PlotWorker method) _set_time_mode() (magscope.ui.plots.PlotWorker method) (magscope.ui.PlotWorker method) _set_timestamp() (magscope.datatypes.VideoBuffer method) _set_write_index() (magscope.datatypes.MatrixBuffer method) (magscope.datatypes.VideoBuffer method) _set_zlut_from_path() (magscope.videoprocessing.VideoProcessorManager method) _set_zlut_frozen_rois() (magscope.videoprocessing.VideoProcessorManager method) _setting_inputs (magscope.ui.controls.MagScopeSettingsPanel attribute) (magscope.ui.MagScopeSettingsPanel attribute) _setting_key() (magscope.ui.AllanDeviationPanel method) (magscope.ui.controls.AllanDeviationPanel method) _SETTING_SPECS (magscope.settings.MagScopeSettings attribute) _settings (magscope.camera.DummyCameraBeads attribute) (magscope.scope.MagScope attribute) (magscope.ui.Controls attribute) (magscope.ui.panel_layout.PanelLayoutManager attribute) (magscope.ui.ui.Controls attribute) _settings() (magscope.ui.AllanDeviationPanel method) (magscope.ui.controls.AllanDeviationPanel method) _SETTINGS_GROUP (magscope.ui.AllanDeviationPanel attribute) (magscope.ui.controls.AllanDeviationPanel attribute) _settings_group (magscope.ui.panel_layout.PanelLayoutManager attribute) _settings_key (magscope.ui.CollapsibleGroupBox attribute) (magscope.ui.widgets.CollapsibleGroupBox attribute) _settings_persistence_warning_shown (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _setup_command_registry() (magscope.scope.MagScope method) _setup_locks() (magscope.scope.MagScope method) _setup_pipes() (magscope.scope.MagScope method) _setup_shared_resources() (magscope.scope.MagScope method) _shared_brushes (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) _shared_pens (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) _shm (magscope.datatypes.MatrixBuffer attribute) (magscope.datatypes.VideoBuffer attribute) _SHM_ATTRS (magscope.datatypes.ZLUTSweepDataset attribute) _shm_data (magscope.datatypes.BeadRoiBuffer attribute) _shm_info (magscope.datatypes.BeadRoiBuffer attribute) (magscope.datatypes.MatrixBuffer attribute) (magscope.datatypes.VideoBuffer attribute) _shm_occupancy (magscope.datatypes.BeadRoiBuffer attribute) _should_use_frozen_zlut_rois() (magscope.videoprocessing.VideoProcessorManager method) _show_auto_bead_selection_capacity_warning() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _show_error() (magscope.ui.controls.MagScopeSettingsPanel method) (magscope.ui.MagScopeSettingsPanel method) _show_settings_persistence_warning() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _show_settings_persistence_warning_if_needed() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _shutdown_complete (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _shutdown_plot_worker() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _shutdown_search_backend() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _sleep_when_idle() (magscope.scope.MagScope method) _slider_value_to_score() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _snapshot_recent_image() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _specs (magscope.ipc.CommandRegistry attribute) _stack_coordination_lock() (magscope.camera.CameraManager method) (magscope.videoprocessing.VideoProcessorManager method) (magscope.videoprocessing.VideoWorker method) _start_managers() (magscope.scope.MagScope method) _start_startup_splash() (magscope.scope.MagScope method) _startup_pending (magscope.ui.controls.ZLUTGenerationDialog attribute) _startup_ready_scheduled (magscope.ui.ui._StartupReadyWindow attribute) _startup_ready_sent (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _startup_shown (magscope.ui.ui._StartupReadyWindow attribute) _startup_splash_close_event (magscope.scope.MagScope attribute) _startup_splash_deadline (magscope.scope.MagScope attribute) _startup_splash_process (magscope.scope.MagScope attribute) _startup_splash_timeout_seconds (magscope.scope.MagScope attribute) _startup_splash_waiting_for_ui_ready (magscope.scope.MagScope attribute) _StartupReadyWindow (class in magscope.ui.ui) _STATE_LABELS (magscope.ui.controls.ZLUTSweepPreviewWidget attribute) _static_label_cache (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _step (magscope.ui.widgets.FlashLabel attribute) _step_capture_complete (magscope.zlut_generation.ZLUTGenerationManager attribute) _STEP_INDEX_DTYPE (magscope.datatypes.ZLUTSweepDataset attribute) _steps (magscope.zlut_generation.ZLUTGenerationManager attribute) _stop() (magscope.ui.plots.PlotWorker method) (magscope.ui.PlotWorker method) _stop_startup_splash() (magscope.scope.MagScope method) _stop_timer() (magscope.ui.ui.UIManager static method) (magscope.ui.UIManager static method) _suppress_bead_roi_updates (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _suppress_layout_callback (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) _sync_fft_enabled_state() (magscope.ui.controls.TrackingOptionsPanel method) (magscope.ui.TrackingOptionsPanel method) _sync_plot_settings_reference_bead() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _sync_plot_settings_selected_bead() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _take_unreserved_stack() (magscope.camera.CameraManager method) _target_index() (magscope.ui.panel_layout.ReorderableColumn method) _target_z (magscope.hardware.FocusMotorBase attribute) _task_owes_reserved_stack (magscope.videoprocessing.VideoWorker attribute) _tasks (magscope.videoprocessing.VideoProcessorManager attribute) (magscope.videoprocessing.VideoWorker attribute) _terminated (magscope.scope.MagScope attribute) _theta_xy (magscope.camera.DummyCameraBeads attribute) _theta_z (magscope.camera.DummyCameraBeads attribute) _timer (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) (magscope.ui.widgets.FlashLabel attribute) _timer_video_view (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _TIMESTAMP_DTYPE (magscope.datatypes.ZLUTSweepDataset attribute) _TitleDragFilter (class in magscope.ui.panel_layout) _to_device_units() (magscope.python_microscope.PythonMicroscopeFocusMotor method) _to_processing_array() (magscope.videoprocessing.VideoProcessorManager static method) _TRACKING_ACQUISITION_MODES (magscope.zlut_generation.ZLUTGenerationManager attribute) _tracking_options (magscope.videoprocessing.VideoProcessorManager attribute) _tracks_buffer (magscope.videoprocessing.VideoWorker attribute) _tracks_snapshot (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) _try_reserve_processing_stack() (magscope.videoprocessing.VideoProcessorManager method) _ts_buf (magscope.datatypes.VideoBuffer attribute) _ts_shm (magscope.datatypes.VideoBuffer attribute) _tukey_taper() (magscope.camera.DummyCameraBeads static method) _UINT64_DTYPE (magscope.datatypes.ZLUTSweepDataset attribute) _update_auto_bead_selection_button_state() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _update_bead_highlight() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _update_bead_highlights() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _update_bead_roi() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _update_beads_in_view() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _update_cached_roi() (magscope.ui.BeadGraphic method) (magscope.ui.widgets.BeadGraphic method) _update_column_counter() (magscope.ui.Controls method) (magscope.ui.ui.Controls method) _update_cursor() (magscope.ui.BeadGraphic method) (magscope.ui.widgets.BeadGraphic method) _update_display_rate() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _update_figure_size() (magscope.ui.plots.PlotWorker method) (magscope.ui.PlotWorker method) _update_flash() (magscope.ui.widgets.FlashLabel method) _update_framerate_estimate() (magscope.python_microscope.PythonMicroscopeCamera method) _update_last_time (magscope.ui.controls.HistogramPanel attribute) (magscope.ui.HistogramPanel attribute) (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) _update_multiple_bead_rois() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _update_next_bead_id_label() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _update_overlay() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) _update_persistence_availability() (magscope.settings.MagScopeSettings method) _update_placeholder() (magscope.ui.panel_layout.ReorderableColumn method) _update_preferred_height() (magscope.ui.controls.ResponsivePlotCanvas method) _update_roi_labels() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _update_simulated_camera_focus() (magscope.hardware.FocusMotorBase method) _update_value_labels() (magscope.ui.controls.TrackingOptionsPanel method) (magscope.ui.TrackingOptionsPanel method) _update_video_buffer_size_label() (magscope.ui.controls.StatusPanel method) (magscope.ui.StatusPanel method) _update_view_and_hist() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _update_view_and_hist_tick() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _update_visibility() (magscope.ui.ui.AddColumnDropTarget method) _update_z_lock_cutoff_for_external_focus_change() (magscope.beadlock.BeadLockManager method) _update_zlut_generation_dialog() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _use_fft_changed() (magscope.ui.controls.TrackingOptionsPanel method) (magscope.ui.TrackingOptionsPanel method) _VALID_DTYPE (magscope.datatypes.ZLUTSweepDataset attribute) _validate_attach_ready_state() (magscope.datatypes.ZLUTSweepDataset method) _validate_bead_id() (magscope.datatypes.BeadRoiBuffer method) _validate_create_parameters() (magscope.datatypes.ZLUTSweepDataset class method) _validate_schema_version() (magscope.datatypes.ZLUTSweepDataset method) _validate_sweep_limits() (magscope.zlut_generation.ZLUTGenerationManager static method) _values (magscope.settings.MagScopeSettings attribute) _video_buffer (magscope.videoprocessing.VideoWorker attribute) _video_buffer_last_index (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _video_viewer_need_reset (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _visible_candidates (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) _visible_label_entries (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _visible_overlay_entries (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) _waiting_for_acquisition (magscope.videoprocessing.VideoProcessorManager attribute) _warning_queue (magscope.videoprocessing.VideoProcessorManager attribute) (magscope.videoprocessing.VideoWorker attribute) _window_sum_integral() (in module magscope.auto_bead_selection) _workers (magscope.videoprocessing.VideoProcessorManager attribute) _wrapper (magscope.ui.panel_layout._TitleDragFilter attribute) _wrapper_from_event() (magscope.ui.panel_layout.ReorderableColumn method) (magscope.ui.ui.AddColumnDropTarget method) _wrappers (magscope.ui.panel_layout.PanelLayoutManager attribute) _write_bead_rois_to_buffer() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) _write_info() (magscope.datatypes.BeadRoiBuffer method) (magscope.datatypes.ZLUTSweepDataset method) _write_state() (magscope.hardware.FocusMotorBase method) _xy (magscope.camera.DummyCameraBeads attribute) _xy_lock_bead_cutoff (magscope.beadlock.BeadLockManager attribute) _xy_lock_global_cutoff (magscope.beadlock.BeadLockManager attribute) _xy_lock_last_time (magscope.beadlock.BeadLockManager attribute) _xy_lock_pending_moves (magscope.beadlock.BeadLockManager attribute) _z (magscope.camera.DummyCameraBeads attribute) _z_lock_expected_focus_target (magscope.beadlock.BeadLockManager attribute) _z_lock_global_cutoff (magscope.beadlock.BeadLockManager attribute) _z_lock_last_focus_target (magscope.beadlock.BeadLockManager attribute) _z_lock_last_time (magscope.beadlock.BeadLockManager attribute) _zlut (magscope.videoprocessing.VideoProcessorManager attribute) _zlut_capture_complete_queue (magscope.videoprocessing.VideoProcessorManager attribute) (magscope.videoprocessing.VideoWorker attribute) _zlut_capture_earliest_timestamp (magscope.videoprocessing.VideoProcessorManager attribute) _zlut_capture_motor_z_value (magscope.videoprocessing.VideoProcessorManager attribute) _zlut_capture_remaining_profiles_per_bead (magscope.videoprocessing.VideoProcessorManager attribute) _zlut_capture_step_index (magscope.videoprocessing.VideoProcessorManager attribute) _zlut_evaluation_bead_ids (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _zlut_evaluation_selected_bead_id (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _zlut_frozen_bead_ids (magscope.videoprocessing.VideoProcessorManager attribute) _zlut_frozen_bead_rois (magscope.videoprocessing.VideoProcessorManager attribute) _zlut_generation_dialog (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _zlut_generation_phase (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _zlut_generation_z_axis_descending (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _zlut_generation_z_axis_max_nm (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _zlut_generation_z_axis_min_nm (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _zlut_metadata (magscope.videoprocessing.VideoProcessorManager attribute) _zlut_path (magscope.videoprocessing.VideoProcessorManager attribute) _zlut_preview_last_poll (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) _zlut_profile_length_queue (magscope.videoprocessing.VideoProcessorManager attribute) (magscope.videoprocessing.VideoWorker attribute) _zlut_requested_sweep_edges() (magscope.ui.ui.UIManager static method) (magscope.ui.UIManager static method) _zlut_sweep_dataset (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) (magscope.videoprocessing.VideoWorker attribute) _zoom (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) A accept() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) accept_button (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) acquisition_dir_button (magscope.ui.AcquisitionPanel attribute) (magscope.ui.controls.AcquisitionPanel attribute) acquisition_dir_on_checkbox (magscope.ui.AcquisitionPanel attribute) (magscope.ui.controls.AcquisitionPanel attribute) acquisition_dir_textedit (magscope.ui.AcquisitionPanel attribute) (magscope.ui.controls.AcquisitionPanel attribute) acquisition_mode_combobox (magscope.ui.AcquisitionPanel attribute) (magscope.ui.controls.AcquisitionPanel attribute) acquisition_on_checkbox (magscope.ui.AcquisitionPanel attribute) (magscope.ui.controls.AcquisitionPanel attribute) acquisition_panel (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) AcquisitionMode (class in magscope.utils) AcquisitionPanel (class in magscope.ui) (class in magscope.ui.controls) active (magscope.ipc_commands.UpdateZLUTGenerationEvaluationCommand attribute) active_count (magscope.datatypes.BeadRoiBuffer property) add_bead() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) add_beads() (magscope.datatypes.BeadRoiBuffer method) add_column() (magscope.ui.panel_layout.PanelLayoutManager method) add_control() (magscope.scope.MagScope method) add_hardware() (magscope.scope.MagScope method) add_panel() (magscope.ui.panel_layout.ReorderableColumn method) add_persistence_listener() (magscope.settings.MagScopeSettings method) add_plot() (magscope.ui.plots.PlotWorker method) (magscope.ui.PlotWorker method) add_random_beads() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) add_timeplot() (magscope.scope.MagScope method) AddColumnDropTarget (class in magscope.ui.ui) AddRandomBeadsCommand (class in magscope.ipc_commands) allan_deviation_panel (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) AllanDeviationPanel (class in magscope.ui) (class in magscope.ui.controls) animation (magscope.ui.CollapsibleGroupBox attribute) (magscope.ui.widgets.CollapsibleGroupBox attribute) append() (magscope.scripting.Script method) apply_button (magscope.ui.controls.MagScopeSettingsPanel attribute) (magscope.ui.MagScopeSettingsPanel attribute) apply_options() (magscope.ui.controls.TrackingOptionsPanel method) (magscope.ui.TrackingOptionsPanel method) arm_zlut_sweep_capture() (magscope.videoprocessing.VideoProcessorManager method) ArmZLUTSweepCaptureCommand (class in magscope.ipc_commands) at_target_tolerance (magscope.hardware.FocusMotorBase attribute) attach() (magscope.datatypes.ZLUTSweepDataset class method) auto_select_button (magscope.ui.BeadSelectionPanel attribute) (magscope.ui.controls.BeadSelectionPanel attribute) AutoBeadCandidate (class in magscope.auto_bead_selection) AutoBeadSearchCancelled AutoBeadSelectionDialog (class in magscope.ui.auto_bead_selection_dialog) avoided_names (magscope.scripting.ScriptRegistry attribute) axes (magscope.ui.AllanDeviationPanel attribute) (magscope.ui.controls.AllanDeviationPanel attribute) (magscope.ui.controls.HistogramPanel attribute) (magscope.ui.controls.ProfilePanel attribute) (magscope.ui.controls.ZLUTSweepPreviewWidget attribute) (magscope.ui.HistogramPanel attribute) (magscope.ui.plots.PlotWorker attribute) (magscope.ui.plots.TimeSeriesPlotBase attribute) (magscope.ui.PlotWorker attribute) (magscope.ui.TimeSeriesPlotBase attribute) axis_index (magscope.ui.plots.TracksTimeSeriesPlot attribute) axis_name (magscope.python_microscope.PythonMicroscopeFocusMotor attribute) (magscope.ui.plots.TracksTimeSeriesPlot attribute) B background_combo (magscope.ui.controls.TrackingOptionsPanel attribute) (magscope.ui.TrackingOptionsPanel attribute) bead (magscope.ui.controls.ZLockPanel attribute) bead_callback() (magscope.ui.controls.ZLockPanel method) bead_id (magscope.ipc_commands.SaveGeneratedZLUTCommand attribute) (magscope.ipc_commands.SelectGeneratedZLUTBeadCommand attribute) (magscope.zlut_generation.GeneratedZLUTResult attribute) bead_ids (magscope.ipc_commands.ArmZLUTSweepCaptureCommand attribute) (magscope.ipc_commands.RequestZLUTProfileLengthCommand attribute) (magscope.ipc_commands.UpdateZLUTGenerationEvaluationCommand attribute) bead_next_id (magscope.ui.ui.UIManager property) (magscope.ui.UIManager property) bead_roi_buffer (magscope.processes.ManagerProcessBase attribute) (magscope.scope.MagScope attribute) bead_roi_updates_suppressed (magscope.ui.ui.UIManager property) (magscope.ui.UIManager property) bead_rois (magscope.ipc_commands.ArmZLUTSweepCaptureCommand attribute) (magscope.ipc_commands.RequestZLUTProfileLengthCommand attribute) (magscope.processes.ManagerProcessBase property) bead_selection_panel (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) bead_selector (magscope.ui.controls.ZLUTGenerationDialog attribute) BeadGraphic (class in magscope.ui) (class in magscope.ui.widgets) beadlock_manager (magscope.scope.MagScope attribute) BeadLockManager (class in magscope.beadlock) BeadRoiBuffer (class in magscope.datatypes) beads_in_view_count (magscope.ui.controls.PlotSettingsPanel attribute) (magscope.ui.PlotSettingsPanel attribute) (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) beads_in_view_count_callback() (magscope.ui.controls.PlotSettingsPanel method) (magscope.ui.PlotSettingsPanel method) beads_in_view_marker_size (magscope.ui.controls.PlotSettingsPanel attribute) (magscope.ui.PlotSettingsPanel attribute) (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) beads_in_view_marker_size_callback() (magscope.ui.controls.PlotSettingsPanel method) (magscope.ui.PlotSettingsPanel method) beads_in_view_on (magscope.ui.controls.PlotSettingsPanel attribute) (magscope.ui.PlotSettingsPanel attribute) (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) beads_in_view_on_callback() (magscope.ui.controls.PlotSettingsPanel method) (magscope.ui.PlotSettingsPanel method) BeadSelectionPanel (class in magscope.ui) (class in magscope.ui.controls) begin_drag() (magscope.ui.panel_layout.ReorderableColumn method) bit_to_dtype (in module magscope.datatypes) bits (magscope.camera.CameraBase attribute) (magscope.camera.DummyCameraBeads attribute) (magscope.camera.DummyCameraFastNoise attribute) (magscope.camera.DummyCameraNoise attribute) (magscope.python_microscope.PythonMicroscopeCamera attribute) BORDER_COLOR_DEFAULT (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) BORDER_COLOR_REFERENCE (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) BORDER_COLOR_SELECTED (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) BROADCAST (magscope.ipc.Delivery attribute) broadcast_command() (in module magscope.ipc) buffer (magscope.ui.plots.TimeSeriesPlotBase attribute) (magscope.ui.TimeSeriesPlotBase attribute) buffer_name (magscope.ui.plots.TimeSeriesPlotBase attribute) (magscope.ui.TimeSeriesPlotBase attribute) buffer_shape (magscope.hardware.FocusMotorBase attribute) (magscope.hardware.HardwareManagerBase attribute) buffer_size (magscope.datatypes.VideoBuffer attribute) BufferOverflow BufferUnderflow button_layout (magscope.ui.controls.ScriptPanel attribute) (magscope.ui.ScriptPanel attribute) C callable (magscope.scripting.ScriptCommandRegistration attribute) callback_acquisition_dir() (magscope.ui.AcquisitionPanel method) (magscope.ui.controls.AcquisitionPanel method) callback_acquisition_dir_on() (magscope.ui.AcquisitionPanel method) (magscope.ui.controls.AcquisitionPanel method) callback_acquisition_mode() (magscope.ui.AcquisitionPanel method) (magscope.ui.controls.AcquisitionPanel method) callback_acquisition_on() (magscope.ui.AcquisitionPanel method) (magscope.ui.controls.AcquisitionPanel method) callback_load() (magscope.ui.controls.ScriptPanel method) (magscope.ui.ScriptPanel method) callback_pause() (magscope.ui.controls.ScriptPanel method) (magscope.ui.ScriptPanel method) callback_refresh() (magscope.ui.CameraPanel method) (magscope.ui.controls.CameraPanel method) callback_set_camera_setting() (magscope.ui.CameraPanel method) (magscope.ui.controls.CameraPanel method) callback_start() (magscope.ui.controls.ScriptPanel method) (magscope.ui.ScriptPanel method) callback_view_clicked() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) camera (magscope.camera.CameraManager attribute) camera_buffers (magscope.camera.CameraBase attribute) camera_consecutive_timeouts (magscope.processes.InterprocessValues attribute) camera_last_frame_timestamp (magscope.processes.InterprocessValues attribute) camera_manager (magscope.scope.MagScope attribute) camera_panel (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) camera_queue_full_events (magscope.processes.InterprocessValues attribute) camera_total_frames (magscope.processes.InterprocessValues attribute) camera_type (magscope.processes.ManagerProcessBase attribute) CameraBase (class in magscope.camera) CameraManager (class in magscope.camera) CameraPanel (class in magscope.ui) (class in magscope.ui.controls) can_cancel (magscope.ipc_commands.UpdateZLUTGenerationStateCommand attribute) cancel_button (magscope.ui.controls.ZLUTGenerationDialog attribute) cancel_drag() (magscope.ui.panel_layout.ReorderableColumn method) cancel_evaluation() (magscope.zlut_generation.ZLUTGenerationManager method) cancel_generation() (magscope.zlut_generation.ZLUTGenerationManager method) cancel_search() (magscope.ui.auto_bead_selection_dialog._AutoBeadSearchProcessBackend method) cancel_zlut_generation() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) CancelGeneratedZLUTEvaluationCommand (class in magscope.ipc_commands) CancelZLUTGenerationCommand (class in magscope.ipc_commands) canvas (magscope.ui.AllanDeviationPanel attribute) (magscope.ui.controls.AllanDeviationPanel attribute) (magscope.ui.controls.HistogramPanel attribute) (magscope.ui.controls.ProfilePanel attribute) (magscope.ui.controls.ZLUTSweepPreviewWidget attribute) (magscope.ui.HistogramPanel attribute) (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) capacity (magscope.datatypes.BeadRoiBuffer attribute) capture_capacity (magscope.ipc_commands.UpdateZLUTGenerationProgressCommand attribute) capture_count (magscope.ipc_commands.UpdateZLUTGenerationProgressCommand attribute) central_layouts (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) central_widgets (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) check_cupy() (in module magscope.utils) check_read_stack() (magscope.datatypes.VideoBuffer method) check_script() (magscope.scripting.ScriptRegistry method) checkbox (magscope.ui.LabeledCheckbox attribute) (magscope.ui.widgets.LabeledCheckbox attribute) clamp_roi_to_scene() (magscope.ui.BeadGraphic class method) (magscope.ui.widgets.BeadGraphic class method) clear() (magscope.datatypes.LiveProfileBuffer method) (magscope.ui.AllanDeviationPanel method) (magscope.ui.controls.AllanDeviationPanel method) (magscope.ui.controls.HistogramPanel method) (magscope.ui.controls.ProfilePanel method) (magscope.ui.controls.ZLUTSweepPreviewWidget method) (magscope.ui.HistogramPanel method) clear_beads() (magscope.datatypes.BeadRoiBuffer method) (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) clear_button (magscope.ui.BeadSelectionPanel attribute) (magscope.ui.controls.BeadSelectionPanel attribute) (magscope.ui.controls.ZLUTPanel attribute) clear_crosshairs() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) clear_image() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) clear_metadata() (magscope.ui.controls.ZLUTPanel method) clear_panels() (magscope.ui.panel_layout.ReorderableColumn method) clear_pending_zlut_profile_length_request() (magscope.videoprocessing.VideoProcessorManager method) clear_placeholder() (magscope.ui.panel_layout.ReorderableColumn method) clear_zlut() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) ClearPendingZLUTProfileLengthCommand (class in magscope.ipc_commands) clicked (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) clone() (magscope.settings.MagScopeSettings method) close() (magscope.datatypes.ZLUTSweepDataset method) close_button (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) (magscope.ui.controls.ZLUTGenerationDialog attribute) closeEvent() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) (magscope.ui.controls.MatplotlibCleanupMixin method) (magscope.ui.controls.ZLUTGenerationDialog method) cls_name (magscope.scripting.ScriptCommandRegistration attribute) cm (magscope.utils.Units attribute) coerce() (magscope.settings.SettingSpec method) collapsed (magscope.ui.CollapsibleGroupBox attribute) (magscope.ui.widgets.CollapsibleGroupBox attribute) CollapsibleGroupBox (class in magscope.ui) (class in magscope.ui.widgets) column (magscope.ui.panel_layout.PanelWrapper attribute) Command (class in magscope.ipc_commands) command (magscope.scripting.ScriptStep attribute) command_for_handler() (magscope.ipc.CommandRegistry method) command_kwargs() (in module magscope.ipc) command_registry (magscope.scope.MagScope attribute) command_type (magscope.ipc.CommandSpec attribute) (magscope.ipc.HandlerRegistration attribute) (magscope.scripting.ScriptCommandRegistration attribute) CommandConflictError CommandRegistrationError CommandRegistry (class in magscope.ipc) CommandSpec (class in magscope.ipc) configure_logging() (in module magscope._logging) configure_shared_resources() (magscope.processes.ManagerProcessBase method) connect() (magscope.camera.CameraBase method) (magscope.camera.DummyCameraBeads method) (magscope.camera.DummyCameraFastNoise method) (magscope.camera.DummyCameraNoise method) (magscope.hardware.HardwareManagerBase method) (magscope.python_microscope.PythonMicroscopeCamera method) (magscope.python_microscope.PythonMicroscopeFocusMotor method) (magscope.python_microscope.PythonMicroscopeHardwareManagerBase method) content_area (magscope.ui.CollapsibleGroupBox attribute) (magscope.ui.widgets.CollapsibleGroupBox attribute) ControlPanelBase (class in magscope.ui) (class in magscope.ui.controls) Controls (class in magscope.ui) (class in magscope.ui.ui) controls (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) controls_to_add (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) coordinatesChanged (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) copy_latest_image() (in module magscope.auto_bead_selection) CORNER_GRIP_SIZE (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) count (magscope.ipc_commands.AddRandomBeadsCommand attribute) create() (magscope.datatypes.ZLUTSweepDataset class method) create_central_widgets() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) create_new_column_with_panel() (magscope.ui.Controls method) (magscope.ui.ui.Controls method) create_one_window_widgets() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) create_pipes() (in module magscope.ipc) create_three_window_widgets() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) create_two_window_widgets() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) createHandle() (magscope.ui.GripSplitter method) (magscope.ui.widgets.GripSplitter method) crop_roi() (in module magscope.auto_bead_selection) crop_stack_to_rois() (in module magscope.utils) CROP_VIDEO (magscope.utils.AcquisitionMode attribute) current_layout() (magscope.ui.panel_layout.PanelLayoutManager method) current_step (magscope.ipc_commands.UpdateScriptStepCommand attribute) (magscope.ipc_commands.UpdateZLUTGenerationProgressCommand attribute) D DatasetNotReadyError date_timestamp_str() (in module magscope.utils) default (magscope.settings.SettingSpec attribute) default_candidate_score_threshold() (in module magscope.auto_bead_selection) default_collapsed (magscope.ui.CollapsibleGroupBox attribute) (magscope.ui.widgets.CollapsibleGroupBox attribute) default_value() (magscope.settings.SettingSpec method) defaults_button (magscope.ui.controls.MagScopeSettingsPanel attribute) (magscope.ui.MagScopeSettingsPanel attribute) defined_keys() (magscope.settings.MagScopeSettings class method) Delivery (class in magscope.ipc) delivery (magscope.ipc.CommandSpec attribute) (magscope.ipc.HandlerRegistration attribute) description (magscope.ipc_commands.UpdateScriptStepCommand attribute) description_label (magscope.ui.controls.HelpPanel attribute) destroy() (magscope.datatypes.ZLUTSweepDataset method) detail (magscope.ipc_commands.UpdateZLUTGenerationStateCommand attribute) detail_label (magscope.ui.controls.ZLUTGenerationDialog attribute) details (magscope.ipc_commands.LogExceptionCommand attribute) (magscope.ipc_commands.ShowErrorCommand attribute) (magscope.ipc_commands.ShowMessageCommand attribute) detect_matching_beads() (in module magscope.auto_bead_selection) DIRECT (magscope.ipc.Delivery attribute) disarm_zlut_sweep_capture() (magscope.videoprocessing.VideoProcessorManager method) DisarmZLUTSweepCaptureCommand (class in magscope.ipc_commands) discard_generated_zlut_evaluation() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) disconnect() (magscope.hardware.HardwareManagerBase method) (magscope.python_microscope.PythonMicroscopeFocusMotor method) (magscope.python_microscope.PythonMicroscopeHardwareManagerBase method) display_name (magscope.settings.SettingSpec attribute) display_rate_status (magscope.ui.controls.StatusPanel attribute) (magscope.ui.StatusPanel attribute) dispose() (magscope.ui.plots.PlotWorker method) (magscope.ui.PlotWorker method) do_main_loop() (magscope.beadlock.BeadLockManager method) (magscope.camera.CameraManager method) (magscope.hardware.HardwareManagerBase method) (magscope.processes.ManagerProcessBase method) (magscope.scripting.ScriptManager method) (magscope.ui.plots.PlotWorker method) (magscope.ui.PlotWorker method) (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) (magscope.videoprocessing.VideoProcessorManager method) (magscope.zlut_generation.ZLUTGenerationManager method) do_xy_lock() (magscope.beadlock.BeadLockManager method) do_z_lock() (magscope.beadlock.BeadLockManager method) dot_count (magscope.ui.controls.StatusPanel attribute) (magscope.ui.StatusPanel attribute) dpi (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) DRAG_BORDER_COLOR (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) drag_finished() (magscope.ui.panel_layout._TitleDragFilter method) drag_handle (magscope.ui.CollapsibleGroupBox attribute) (magscope.ui.widgets.CollapsibleGroupBox attribute) DRAG_PEN_WIDTH (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) dragEnterEvent() (magscope.ui.panel_layout.ReorderableColumn method) (magscope.ui.ui.AddColumnDropTarget method) draggable (magscope.ui.panel_layout.PanelWrapper attribute) dragLeaveEvent() (magscope.ui.panel_layout.ReorderableColumn method) (magscope.ui.ui.AddColumnDropTarget method) dragMoveEvent() (magscope.ui.panel_layout.ReorderableColumn method) (magscope.ui.ui.AddColumnDropTarget method) drain_pipe_until_quit() (in module magscope.ipc) drawForeground() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) dropEvent() (magscope.ui.panel_layout.ReorderableColumn method) (magscope.ui.ui.AddColumnDropTarget method) dtype (magscope.camera.CameraBase attribute) (magscope.camera.DummyCameraBeads attribute) (magscope.camera.DummyCameraFastNoise attribute) (magscope.camera.DummyCameraNoise attribute) (magscope.datatypes.MatrixBuffer attribute) (magscope.datatypes.VideoBuffer attribute) (magscope.python_microscope.PythonMicroscopeCamera attribute) DummyCameraBeads (class in magscope.camera) DummyCameraFastNoise (class in magscope.camera) DummyCameraNoise (class in magscope.camera) duration (magscope.ipc_commands.SleepCommand attribute) E earliest_timestamp (magscope.ipc_commands.ArmZLUTSweepCaptureCommand attribute) EMPTY (magscope.scripting.ScriptStatus attribute) enable (magscope.ui.controls.ProfilePanel attribute) enable_checkbox (magscope.ui.controls.HistogramPanel attribute) (magscope.ui.HistogramPanel attribute) enabled (magscope.ui.controls.XYLockPanel attribute) (magscope.ui.controls.ZLockPanel attribute) enabled_callback() (magscope.ui.controls.HistogramPanel method) (magscope.ui.controls.ProfilePanel method) (magscope.ui.controls.XYLockPanel method) (magscope.ui.controls.ZLockPanel method) (magscope.ui.HistogramPanel method) enterEvent() (magscope.ui.controls.HelpPanel method) (magscope.ui.controls.ResetPanel method) (magscope.ui.widgets.GripHandle method) error (magscope.ipc_commands.ZLUTSweepCaptureCompleteCommand attribute) ERROR (magscope.scripting.ScriptStatus attribute) est_fps (magscope.camera.DummyCameraBeads attribute) (magscope.camera.DummyCameraFastNoise attribute) (magscope.camera.DummyCameraNoise attribute) est_fps_count (magscope.camera.DummyCameraBeads attribute) (magscope.camera.DummyCameraFastNoise attribute) (magscope.camera.DummyCameraNoise attribute) est_fps_time (magscope.camera.DummyCameraBeads attribute) (magscope.camera.DummyCameraFastNoise attribute) (magscope.camera.DummyCameraNoise attribute) event() (magscope.ui.ui._StartupReadyWindow method) eventFilter() (magscope.ui.panel_layout._TitleDragFilter method) ExecuteXYLockCommand (class in magscope.ipc_commands) export_yaml() (magscope.settings.MagScopeSettings method) F fake_image_index (magscope.camera.DummyCameraFastNoise attribute) fake_images (magscope.camera.DummyCameraFastNoise attribute) fake_images_n (magscope.camera.DummyCameraFastNoise attribute) fake_settings (magscope.camera.DummyCameraFastNoise attribute) (magscope.camera.DummyCameraNoise attribute) fetch() (magscope.camera.CameraBase method) (magscope.camera.DummyCameraBeads method) (magscope.camera.DummyCameraFastNoise method) (magscope.camera.DummyCameraNoise method) (magscope.hardware.FocusMotorBase method) (magscope.hardware.HardwareManagerBase method) (magscope.python_microscope.PythonMicroscopeCamera method) (magscope.python_microscope.PythonMicroscopeHardwareManager method) fetch_interval (magscope.hardware.FocusMotorBase attribute) fft_gaus_factor (magscope.ui.controls.TrackingOptionsPanel attribute) (magscope.ui.TrackingOptionsPanel attribute) fft_oversample (magscope.ui.controls.TrackingOptionsPanel attribute) (magscope.ui.TrackingOptionsPanel attribute) fft_rmax (magscope.ui.controls.TrackingOptionsPanel attribute) (magscope.ui.TrackingOptionsPanel attribute) fft_rmin (magscope.ui.controls.TrackingOptionsPanel attribute) (magscope.ui.TrackingOptionsPanel attribute) fig_height (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) fig_width (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) figure (magscope.ui.AllanDeviationPanel attribute) (magscope.ui.controls.AllanDeviationPanel attribute) (magscope.ui.controls.HistogramPanel attribute) (magscope.ui.controls.ProfilePanel attribute) (magscope.ui.controls.ZLUTSweepPreviewWidget attribute) (magscope.ui.HistogramPanel attribute) (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) figure_size_changed (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) figure_size_signal (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) filepath (magscope.ipc_commands.LoadZLUTCommand attribute) (magscope.ipc_commands.SaveGeneratedZLUTCommand attribute) (magscope.ipc_commands.UpdateZLUTMetadataCommand attribute) filepath_textedit (magscope.ui.controls.ScriptPanel attribute) (magscope.ui.controls.ZLUTPanel attribute) (magscope.ui.ScriptPanel attribute) FILL_COLOR_DEFAULT (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) FILL_COLOR_REFERENCE (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) FILL_COLOR_SELECTED (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) filter_candidates_by_score_threshold() (in module magscope.auto_bead_selection) finish_drag() (magscope.ui.panel_layout.ReorderableColumn method) FINISHED (magscope.scripting.ScriptStatus attribute) (magscope.utils.PoolVideoFlag attribute) FlashLabel (class in magscope.ui.widgets) fN (magscope.utils.Units attribute) FocusMotorBase (class in magscope.hardware) force_close() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) (magscope.ui.controls.ZLUTGenerationDialog method) from_qsettings() (magscope.settings.MagScopeSettings class method) fs (magscope.utils.Units attribute) FULL_VIDEO (magscope.utils.AcquisitionMode attribute) G generate_button (magscope.ui.controls.ZLUTGenerationPanel attribute) generate_callback() (magscope.ui.controls.ZLUTGenerationPanel method) GeneratedZLUTResult (class in magscope.zlut_generation) get_beads() (magscope.datatypes.BeadRoiBuffer method) get_cached_bead_rois() (magscope.processes.ManagerProcessBase method) get_camera_setting() (magscope.camera.CameraManager method) get_capacity() (magscope.datatypes.ZLUTSweepDataset method) get_class_name() (magscope.scripting.ScriptRegistry static method) get_count() (magscope.datatypes.ZLUTSweepDataset method) get_count_index() (magscope.datatypes.MatrixBuffer method) get_current_z() (magscope.hardware.FocusMotorBase method) (magscope.python_microscope.PythonMicroscopeFocusMotor method) get_fake_image() (magscope.camera.DummyCameraFastNoise method) get_is_moving() (magscope.hardware.FocusMotorBase method) (magscope.python_microscope.PythonMicroscopeFocusMotor method) get_label_scene_position() (magscope.ui.BeadGraphic method) (magscope.ui.widgets.BeadGraphic method) get_level() (magscope.datatypes.VideoBuffer method) get_logger() (in module magscope._logging) get_next_available_bead_id() (magscope.datatypes.BeadRoiBuffer method) get_position_limits() (magscope.hardware.FocusMotorBase method) (magscope.python_microscope.PythonMicroscopeFocusMotor method) get_read_index() (magscope.datatypes.MatrixBuffer method) get_roi_bounds() (magscope.ui.BeadGraphic method) (magscope.ui.widgets.BeadGraphic method) get_setting() (magscope.camera.CameraBase method) (magscope.camera.DummyCameraBeads method) (magscope.camera.DummyCameraFastNoise method) (magscope.camera.DummyCameraNoise method) (magscope.python_microscope.PythonMicroscopeCamera method) get_target_z() (magscope.hardware.FocusMotorBase method) get_unread_stack_count() (magscope.datatypes.VideoBuffer method) get_write_index() (magscope.datatypes.MatrixBuffer method) GetCameraSettingCommand (class in magscope.ipc_commands) grid_layout (magscope.ui.controls.PlotSettingsPanel attribute) (magscope.ui.PlotSettingsPanel attribute) GripHandle (class in magscope.ui.widgets) GripSplitter (class in magscope.ui) (class in magscope.ui.widgets) groupbox (magscope.ui.ControlPanelBase attribute) (magscope.ui.controls.ControlPanelBase attribute) H handle_capture_complete() (magscope.zlut_generation.ZLUTGenerationManager method) handle_move_absolute() (magscope.hardware.FocusMotorBase method) handle_released() (magscope.ui.GripSplitter method) (magscope.ui.widgets.GripSplitter method) handler (magscope.ipc.CommandSpec attribute) (magscope.ipc.HandlerRegistration attribute) HandlerRegistration (class in magscope.ipc) handlers_for_target() (magscope.ipc.CommandRegistry method) hardware_types (magscope.processes.ManagerProcessBase attribute) HardwareManagerBase (class in magscope.hardware) has_image() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) has_room_for_new_column() (magscope.ui.Controls method) (magscope.ui.ui.Controls method) has_tweezepy_support() (in module magscope.ui.controls) height (magscope.camera.CameraBase attribute) (magscope.camera.DummyCameraBeads attribute) (magscope.camera.DummyCameraFastNoise attribute) (magscope.camera.DummyCameraNoise attribute) (magscope.python_microscope.PythonMicroscopeCamera attribute) help_panel (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) HELP_URL (magscope.ui.controls.HelpPanel attribute) HelpPanel (class in magscope.ui.controls) histogram_panel (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) HistogramPanel (class in magscope.ui) (class in magscope.ui.controls) history_window (magscope.ui.AllanDeviationPanel attribute) (magscope.ui.controls.AllanDeviationPanel attribute) history_window_hint (magscope.ui.AllanDeviationPanel attribute) (magscope.ui.controls.AllanDeviationPanel attribute) HOVER_BORDER_COLOR (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) HOVER_PEN_WIDTH (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) hoverEnterEvent() (magscope.ui.BeadGraphic method) (magscope.ui.widgets.BeadGraphic method) hoverLeaveEvent() (magscope.ui.BeadGraphic method) (magscope.ui.widgets.BeadGraphic method) I id (magscope.ipc_commands.RemoveBeadFromPendingMovesCommand attribute) (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) IDLE_PEN_WIDTH (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) ids (magscope.ipc_commands.RemoveBeadsFromPendingMovesCommand attribute) image_scene_rect() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) image_shape (magscope.datatypes.VideoBuffer attribute) image_signal (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) image_size (magscope.datatypes.VideoBuffer attribute) import_yaml() (magscope.settings.MagScopeSettings class method) int_to_uint_dtype() (in module magscope.datatypes) InterprocessValues (class in magscope.processes) interval (magscope.ui.controls.XYLockPanel attribute) (magscope.ui.controls.ZLockPanel attribute) interval_callback() (magscope.ui.controls.XYLockPanel method) (magscope.ui.controls.ZLockPanel method) is_at_target() (magscope.hardware.FocusMotorBase method) is_connected (magscope.camera.CameraBase attribute) itemChange() (magscope.ui.BeadGraphic method) (magscope.ui.widgets.BeadGraphic method) itemsize (magscope.datatypes.MatrixBuffer attribute) (magscope.datatypes.VideoBuffer attribute) iterations (magscope.ui.controls.TrackingOptionsPanel attribute) (magscope.ui.TrackingOptionsPanel attribute) K key (magscope.settings.SettingSpec attribute) L label (magscope.settings.SettingSpec property) (magscope.ui.BeadGraphic attribute) (magscope.ui.LabeledCheckbox attribute) (magscope.ui.LabeledLineEdit attribute) (magscope.ui.LabeledLineEditWithValue attribute) (magscope.ui.ui.LoadingWindow attribute) (magscope.ui.widgets.BeadGraphic attribute) (magscope.ui.widgets.LabeledCheckbox attribute) (magscope.ui.widgets.LabeledLineEdit attribute) (magscope.ui.widgets.LabeledLineEditWithValue attribute) LABEL_COLOR (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) LABEL_FONT (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) LABEL_OFFSET_X (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) LABEL_OFFSET_Y (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) label_scene_position_for_roi() (magscope.ui.BeadGraphic class method) (magscope.ui.widgets.BeadGraphic class method) LabeledCheckbox (class in magscope.ui) (class in magscope.ui.widgets) LabeledLineEdit (class in magscope.ui) (class in magscope.ui.widgets) LabeledLineEditWithValue (class in magscope.ui) (class in magscope.ui.widgets) LabeledStepperLineEdit (class in magscope.ui) (class in magscope.ui.widgets) last_time (magscope.camera.DummyCameraBeads attribute) (magscope.camera.DummyCameraFastNoise attribute) (magscope.camera.DummyCameraNoise attribute) last_update_label (magscope.ui.CameraPanel attribute) (magscope.ui.controls.CameraPanel attribute) layout (magscope.ui.LabeledCheckbox attribute) (magscope.ui.LabeledLineEdit attribute) (magscope.ui.LabeledLineEditWithValue attribute) (magscope.ui.LabeledStepperLineEdit attribute) (magscope.ui.widgets.LabeledCheckbox attribute) (magscope.ui.widgets.LabeledLineEdit attribute) (magscope.ui.widgets.LabeledLineEditWithValue attribute) (magscope.ui.widgets.LabeledStepperLineEdit attribute) layout() (magscope.ui.ControlPanelBase method) (magscope.ui.controls.ControlPanelBase method) layout_changed() (magscope.ui.panel_layout.PanelLayoutManager method) layout_manager (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) LAYOUT_SETTINGS_GROUP (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) leaveEvent() (magscope.ui.controls.HelpPanel method) (magscope.ui.controls.ResetPanel method) (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) (magscope.ui.widgets.GripHandle method) left_button (magscope.ui.LabeledStepperLineEdit attribute) (magscope.ui.widgets.LabeledStepperLineEdit attribute) limits (magscope.ui.controls.PlotSettingsPanel attribute) (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotSettingsPanel attribute) (magscope.ui.PlotWorker attribute) limits_callback() (magscope.ui.controls.PlotSettingsPanel method) (magscope.ui.PlotSettingsPanel method) limits_signal (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) line (magscope.ui.plots.TracksTimeSeriesPlot attribute) line_ratio (magscope.ui.controls.TrackingOptionsPanel attribute) (magscope.ui.TrackingOptionsPanel attribute) lineedit (magscope.ui.LabeledLineEdit attribute) (magscope.ui.LabeledLineEditWithValue attribute) (magscope.ui.LabeledStepperLineEdit attribute) (magscope.ui.widgets.LabeledLineEdit attribute) (magscope.ui.widgets.LabeledLineEditWithValue attribute) (magscope.ui.widgets.LabeledStepperLineEdit attribute) live_profile_bead (magscope.processes.InterprocessValues attribute) live_profile_buffer (magscope.processes.ManagerProcessBase attribute) (magscope.scope.MagScope attribute) live_profile_enabled (magscope.processes.InterprocessValues attribute) LiveProfileBuffer (class in magscope.datatypes) load_after_save (magscope.ipc_commands.SaveGeneratedZLUTCommand attribute) load_button (magscope.ui.controls.MagScopeSettingsPanel attribute) (magscope.ui.controls.ScriptPanel attribute) (magscope.ui.MagScopeSettingsPanel attribute) (magscope.ui.ScriptPanel attribute) load_script() (magscope.scripting.ScriptManager method) load_tweezepy_avar() (in module magscope.ui.controls) load_zlut_file() (magscope.videoprocessing.VideoProcessorManager method) LOADED (magscope.scripting.ScriptStatus attribute) LoadingWindow (class in magscope.ui.ui) LoadScriptCommand (class in magscope.ipc_commands) LoadZLUTCommand (class in magscope.ipc_commands) lock (magscope.datatypes.BeadRoiBuffer attribute) (magscope.datatypes.MatrixBuffer attribute) (magscope.datatypes.VideoBuffer attribute) (magscope.datatypes.ZLUTSweepDataset attribute) lock_names (magscope.scope.MagScope attribute) locked (magscope.ui.BeadGraphic property) (magscope.ui.widgets.BeadGraphic property) locks (magscope.processes.ManagerProcessBase attribute) (magscope.scope.MagScope attribute) (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) log_exception() (magscope.scope.MagScope method) LogExceptionCommand (class in magscope.ipc_commands) logger (in module magscope.datatypes) (in module magscope.processes) (in module magscope.scope) (in module magscope.scripting) (in module magscope.ui.ui) (in module magscope.videoprocessing) (in module magscope.zlut_generation) lookup_n_local (magscope.ui.controls.TrackingOptionsPanel attribute) (magscope.ui.TrackingOptionsPanel attribute) M m (magscope.utils.Units attribute) MAG_SCOPE (magscope.ipc.Delivery attribute) magscope module MagScope (class in magscope.scope) magscope._logging module magscope.auto_bead_selection module magscope.beadlock module magscope.camera module magscope.datatypes module magscope.hardware module magscope.ipc module magscope.ipc_commands module magscope.main_dev module magscope.processes module magscope.python_microscope module magscope.scope module magscope.scripting module magscope.settings module magscope.startup_splash module magscope.ui module magscope.ui.auto_bead_selection_dialog module magscope.ui.controls module magscope.ui.panel_layout module magscope.ui.plots module magscope.ui.ui module magscope.ui.video_viewer module magscope.ui.widgets module magscope.utils module magscope.videoprocessing module magscope.zlut_generation module MagScopeSettings (class in magscope.settings) MagScopeSettingsPanel (class in magscope.ui) (class in magscope.ui.controls) main() (in module magscope.main_dev) manager (magscope.ui.ControlPanelBase attribute) (magscope.ui.Controls attribute) (magscope.ui.controls.ControlPanelBase attribute) (magscope.ui.controls.HelpPanel attribute) (magscope.ui.controls.ResetPanel attribute) (magscope.ui.ui.Controls attribute) ManagerProcessBase (class in magscope.processes) mark_drop_accepted() (magscope.ui.panel_layout.PanelWrapper method) mark_starting() (magscope.ui.controls.ZLUTGenerationDialog method) MatplotlibCleanupMixin (class in magscope.ui.controls) MatrixBuffer (class in magscope.datatypes) max (magscope.ui.controls.XYLockPanel attribute) (magscope.ui.controls.ZLockPanel attribute) max_callback() (magscope.ui.controls.XYLockPanel method) (magscope.ui.controls.ZLockPanel method) max_id_plus_one (magscope.datatypes.BeadRoiBuffer property) max_value (magscope.ui.controls.ZLUTPanel attribute) maximum (magscope.settings.SettingSpec attribute) measurements_input (magscope.ui.controls.ZLUTGenerationPanel attribute) meth_name (magscope.scripting.ScriptCommandRegistration attribute) min_value (magscope.ui.controls.ZLUTPanel attribute) minimum (magscope.settings.SettingSpec attribute) MissingCommandHandlerError mm (magscope.utils.Units attribute) mN (magscope.utils.Units attribute) mode (magscope.ipc_commands.SetAcquisitionModeCommand attribute) module magscope magscope._logging magscope.auto_bead_selection magscope.beadlock magscope.camera magscope.datatypes magscope.hardware magscope.ipc magscope.ipc_commands magscope.main_dev magscope.processes magscope.python_microscope magscope.scope magscope.scripting magscope.settings magscope.startup_splash magscope.ui magscope.ui.auto_bead_selection_dialog magscope.ui.controls magscope.ui.panel_layout magscope.ui.plots magscope.ui.ui magscope.ui.video_viewer magscope.ui.widgets magscope.utils magscope.videoprocessing magscope.zlut_generation motor_z_value (magscope.ipc_commands.ArmZLUTSweepCaptureCommand attribute) (magscope.ipc_commands.UpdateZLUTGenerationProgressCommand attribute) mouseMoveEvent() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) mousePressEvent() (magscope.ui.BeadGraphic method) (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) (magscope.ui.widgets.BeadGraphic method) (magscope.ui.widgets.GripHandle method) mouseReleaseEvent() (magscope.ui.BeadGraphic method) (magscope.ui.controls.HelpPanel method) (magscope.ui.controls.ResetPanel method) (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) (magscope.ui.widgets.BeadGraphic method) (magscope.ui.widgets.GripHandle method) move() (magscope.ui.BeadGraphic method) (magscope.ui.widgets.BeadGraphic method) move_absolute() (magscope.hardware.FocusMotorBase method) (magscope.python_microscope.PythonMicroscopeFocusMotor method) move_beads() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) move_roi() (magscope.ui.BeadGraphic class method) (magscope.ui.widgets.BeadGraphic class method) MoveBeadsCommand (class in magscope.ipc_commands) MoveFocusMotorAbsoluteCommand (class in magscope.ipc_commands) moves (magscope.ipc_commands.MoveBeadsCommand attribute) ms (magscope.utils.Units attribute) must_be_even (magscope.settings.SettingSpec attribute) mutex (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) N N (magscope.utils.Units attribute) n_bins (magscope.ui.controls.HistogramPanel attribute) (magscope.ui.HistogramPanel attribute) n_images (magscope.datatypes.VideoBuffer attribute) n_local (magscope.ui.controls.TrackingOptionsPanel attribute) (magscope.ui.TrackingOptionsPanel attribute) n_plots (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) n_total_images (magscope.datatypes.VideoBuffer attribute) n_windows (magscope.ui.ui.UIManager property) (magscope.ui.UIManager property) name (magscope.datatypes.BeadRoiBuffer attribute) (magscope.datatypes.MatrixBuffer attribute) (magscope.datatypes.VideoBuffer attribute) NAME (magscope.datatypes.ZLUTSweepDataset attribute) name (magscope.datatypes.ZLUTSweepDataset attribute) (magscope.ipc_commands.GetCameraSettingCommand attribute) (magscope.ipc_commands.SetCameraSettingCommand attribute) (magscope.ipc_commands.UpdateCameraSettingCommand attribute) (magscope.processes.ManagerProcessBase attribute) (magscope.ui.GripSplitter attribute) (magscope.ui.panel_layout.ReorderableColumn attribute) (magscope.ui.widgets.GripSplitter attribute) name_label (magscope.ui.LabeledStepperLineEdit attribute) (magscope.ui.widgets.LabeledStepperLineEdit attribute) nbytes (magscope.datatypes.MatrixBuffer attribute) next_bead_id_label (magscope.ui.BeadSelectionPanel attribute) (magscope.ui.controls.BeadSelectionPanel attribute) nm (magscope.utils.Units attribute) nm_per_px (magscope.camera.CameraBase attribute) (magscope.camera.DummyCameraBeads attribute) (magscope.camera.DummyCameraFastNoise attribute) (magscope.camera.DummyCameraNoise attribute) (magscope.python_microscope.PythonMicroscopeCamera attribute) nN (magscope.utils.Units attribute) NO_DIRECTORY_SELECTED_TEXT (magscope.ui.AcquisitionPanel attribute) (magscope.ui.controls.AcquisitionPanel attribute) NO_SCRIPT_SELECTED_TEXT (magscope.ui.controls.ScriptPanel attribute) (magscope.ui.ScriptPanel attribute) NO_ZLUT_SELECTED_TEXT (magscope.ui.controls.ZLUTPanel attribute) normalized_cross_correlation() (in module magscope.auto_bead_selection) normalized_cross_correlation_chunked() (in module magscope.auto_bead_selection) notify_drag_finished() (magscope.ui.panel_layout.PanelLayoutManager method) notify_drag_started() (magscope.ui.panel_layout.PanelLayoutManager method) now (magscope.ipc_commands.ExecuteXYLockCommand attribute) ns (magscope.utils.Units attribute) numpy_type_to_qt_image_type() (in module magscope.utils) O offset (magscope.ipc_commands.SetSimulatedFocusCommand attribute) on_active_bead_move_completed() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) on_move_completed() (magscope.ui.BeadGraphic method) (magscope.ui.widgets.BeadGraphic method) once_callback() (magscope.ui.controls.XYLockPanel method) only_beads_checkbox (magscope.ui.controls.HistogramPanel attribute) (magscope.ui.HistogramPanel attribute) P paint() (magscope.ui.BeadGraphic method) (magscope.ui.widgets.BeadGraphic method) paintEvent() (magscope.ui.widgets.GripHandle method) panel_id (magscope.ui.panel_layout.PanelWrapper attribute) panel_ids() (magscope.ui.panel_layout.ReorderableColumn method) PANEL_MIME_TYPE (in module magscope.ui.panel_layout) panel_widget (magscope.ui.panel_layout.PanelWrapper attribute) PanelLayoutManager (class in magscope.ui.panel_layout) panels (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) panels() (magscope.ui.panel_layout.ReorderableColumn method) PanelWrapper (class in magscope.ui.panel_layout) parent (magscope.ui.plots.TimeSeriesPlotBase attribute) (magscope.ui.TimeSeriesPlotBase attribute) path (magscope.ipc_commands.LoadScriptCommand attribute) pause_button (magscope.ui.controls.ScriptPanel attribute) (magscope.ui.ScriptPanel attribute) pause_script() (magscope.scripting.ScriptManager method) PAUSED (magscope.scripting.ScriptStatus attribute) PauseScriptCommand (class in magscope.ipc_commands) peak() (magscope.datatypes.ZLUTSweepDataset method) peak_image() (magscope.datatypes.VideoBuffer method) peak_sorted() (magscope.datatypes.MatrixBuffer method) peak_stack() (magscope.datatypes.VideoBuffer method) peak_unsorted() (magscope.datatypes.LiveProfileBuffer method) (magscope.datatypes.MatrixBuffer method) pen_width (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) persistence_available (magscope.settings.MagScopeSettings attribute) persistent_copy() (magscope.settings.MagScopeSettings method) phase (magscope.ipc_commands.UpdateZLUTGenerationStateCommand attribute) pipes (magscope.scope.MagScope attribute) plot() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) plot_settings_panel (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) plot_thread (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) plot_worker (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) plots (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) plots_to_add (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) plots_widget (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) PlotSettingsPanel (class in magscope.ui) (class in magscope.ui.controls) PlotWorker (class in magscope.ui) (class in magscope.ui.plots) pN (magscope.utils.Units attribute) poll_messages() (magscope.ui.auto_bead_selection_dialog._AutoBeadSearchProcessBackend method) PoolVideoFlag (class in magscope.utils) position_scale (magscope.python_microscope.PythonMicroscopeFocusMotor attribute) preview_widget (magscope.ui.controls.ZLUTGenerationDialog attribute) print() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) print_ipc_commands (magscope.scope.MagScope property) print_registered_commands() (magscope.scope.MagScope method) print_registered_script_commands() (magscope.scope.MagScope method) print_script_commands (magscope.scope.MagScope property) process() (magscope.videoprocessing.VideoWorker method) process_name (magscope.ipc_commands.LogExceptionCommand attribute) (magscope.ipc_commands.StartupReadyCommand attribute) processes (magscope.scope.MagScope attribute) profile_capacity (magscope.datatypes.LiveProfileBuffer attribute) profile_length (magscope.ipc_commands.ReportProfileLengthCommand attribute) (magscope.ipc_commands.ReportZLUTProfileLengthCommand attribute) (magscope.ipc_commands.UpdateZLUTMetadataCommand attribute) profile_length_label (magscope.ui.controls.ProfilePanel attribute) profile_length_value (magscope.ui.controls.ZLUTPanel attribute) profile_panel (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) ProfilePanel (class in magscope.ui.controls) profiles_per_bead (magscope.ipc_commands.StartZLUTGenerationCommand attribute) progress_bar (magscope.ui.controls.ZLUTGenerationDialog attribute) progress_label (magscope.ui.controls.ZLUTGenerationDialog attribute) ps (magscope.utils.Units attribute) PythonMicroscopeCamera (class in magscope.python_microscope) PythonMicroscopeFocusMotor (class in magscope.python_microscope) PythonMicroscopeHardwareManager (class in magscope.python_microscope) PythonMicroscopeHardwareManagerBase (class in magscope.python_microscope) Q qt_app (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) quit() (magscope.hardware.HardwareManagerBase method) (magscope.processes.ManagerProcessBase method) (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) (magscope.videoprocessing.VideoProcessorManager method) (magscope.zlut_generation.ZLUTGenerationManager method) QuitCommand (class in magscope.ipc_commands) quitting_event (magscope.processes.ManagerProcessBase property) quitting_events (magscope.scope.MagScope attribute) R radial_oversample (magscope.ui.controls.TrackingOptionsPanel attribute) (magscope.ui.TrackingOptionsPanel attribute) read() (magscope.datatypes.MatrixBuffer method) read_image() (magscope.datatypes.VideoBuffer method) read_preview() (magscope.datatypes.ZLUTSweepDataset method) read_stack_no_return() (magscope.datatypes.VideoBuffer method) READY (magscope.utils.PoolVideoFlag attribute) receive_ipc() (magscope.processes.ManagerProcessBase method) (magscope.scope.MagScope method) reference_bead (magscope.ui.controls.PlotSettingsPanel attribute) (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotSettingsPanel attribute) (magscope.ui.PlotWorker attribute) (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) reference_bead_callback() (magscope.ui.controls.PlotSettingsPanel method) (magscope.ui.PlotSettingsPanel method) reference_bead_signal (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) refresh_bead_rois() (magscope.beadlock.BeadLockManager method) (magscope.processes.ManagerProcessBase method) (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) refresh_button (magscope.ui.AllanDeviationPanel attribute) (magscope.ui.CameraPanel attribute) (magscope.ui.controls.AllanDeviationPanel attribute) (magscope.ui.controls.CameraPanel attribute) refresh_plot() (magscope.ui.AllanDeviationPanel method) (magscope.ui.controls.AllanDeviationPanel method) refresh_visibility() (magscope.ui.ui.AddColumnDropTarget method) register() (magscope.ipc.CommandRegistry method) register_class_methods() (magscope.scripting.ScriptRegistry method) register_ipc_command() (in module magscope.ipc) register_manager() (magscope.ipc.CommandRegistry method) register_object() (magscope.ipc.CommandRegistry method) register_panel() (magscope.ui.panel_layout.PanelLayoutManager method) register_script_command() (in module magscope.utils) reject() (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog method) relative_time_window_callback() (magscope.ui.controls.PlotSettingsPanel method) (magscope.ui.PlotSettingsPanel method) relative_window_seconds (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) relative_window_signal (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) release() (magscope.camera.CameraBase method) (magscope.camera.DummyCameraBeads method) (magscope.camera.DummyCameraFastNoise method) (magscope.camera.DummyCameraNoise method) (magscope.python_microscope.PythonMicroscopeCamera method) release_all() (magscope.camera.CameraBase method) (magscope.python_microscope.PythonMicroscopeCamera method) released (magscope.ui.widgets.GripHandle attribute) remaining_profiles_per_bead (magscope.ipc_commands.ArmZLUTSweepCaptureCommand attribute) remove() (magscope.ui.BeadGraphic method) (magscope.ui.widgets.BeadGraphic method) remove_bead() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) remove_bead_from_xy_lock_pending_moves() (magscope.beadlock.BeadLockManager method) remove_beads() (magscope.datatypes.BeadRoiBuffer method) remove_beads_from_xy_lock_pending_moves() (magscope.beadlock.BeadLockManager method) remove_column() (magscope.ui.panel_layout.PanelLayoutManager method) remove_panel() (magscope.ui.panel_layout.ReorderableColumn method) RemoveBeadFromPendingMovesCommand (class in magscope.ipc_commands) RemoveBeadsFromPendingMovesCommand (class in magscope.ipc_commands) reorder_beads() (magscope.datatypes.BeadRoiBuffer method) ReorderableColumn (class in magscope.ui.panel_layout) replace_beads() (magscope.datatypes.BeadRoiBuffer method) report_focus_motor_limits() (magscope.hardware.FocusMotorBase method) (magscope.zlut_generation.ZLUTGenerationManager method) report_frame_received() (magscope.camera.CameraBase method) report_profile_length() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) (magscope.videoprocessing.VideoProcessorManager method) (magscope.zlut_generation.ZLUTGenerationManager method) report_queue_full() (magscope.camera.CameraBase method) report_timeout() (magscope.camera.CameraBase method) report_zlut_profile_length() (magscope.videoprocessing.VideoProcessorManager method) ReportFocusMotorLimitsCommand (class in magscope.ipc_commands) ReportProfileLengthCommand (class in magscope.ipc_commands) ReportZLUTProfileLengthCommand (class in magscope.ipc_commands) request_profile_length() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) request_zlut_file() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) RequestFocusMotorLimitsCommand (class in magscope.ipc_commands) RequestProfileLengthCommand (class in magscope.ipc_commands) RequestZLUTProfileLengthCommand (class in magscope.ipc_commands) reset_bead_ids() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) reset_defaults() (magscope.ui.controls.TrackingOptionsPanel method) (magscope.ui.TrackingOptionsPanel method) reset_health_counters() (magscope.camera.CameraBase method) reset_id_button (magscope.ui.BeadSelectionPanel attribute) (magscope.ui.controls.BeadSelectionPanel attribute) reset_panel (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) reset_to_default() (magscope.ui.CollapsibleGroupBox method) (magscope.ui.widgets.CollapsibleGroupBox method) reset_to_defaults() (magscope.settings.MagScopeSettings method) (magscope.ui.Controls method) (magscope.ui.ui.Controls method) reset_view() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) ResetPanel (class in magscope.ui.controls) ResizableLabel (class in magscope.ui) (class in magscope.ui.widgets) resized (magscope.ui.ResizableLabel attribute) (magscope.ui.widgets.ResizableLabel attribute) resizeEvent() (magscope.ui.Controls method) (magscope.ui.controls.ResponsivePlotCanvas method) (magscope.ui.ResizableLabel method) (magscope.ui.ui.Controls method) (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) (magscope.ui.widgets.ResizableLabel method) ResponsivePlotCanvas (class in magscope.ui.controls) restore_layout() (magscope.ui.panel_layout.PanelLayoutManager method) resume_script() (magscope.scripting.ScriptManager method) ResumeScriptCommand (class in magscope.ipc_commands) right_button (magscope.ui.LabeledStepperLineEdit attribute) (magscope.ui.widgets.LabeledStepperLineEdit attribute) roi (magscope.auto_bead_selection.AutoBeadCandidate attribute) roi_from_center() (magscope.ui.BeadGraphic class method) (magscope.ui.widgets.BeadGraphic class method) roi_is_within_image() (in module magscope.auto_bead_selection) roi_overlaps() (in module magscope.auto_bead_selection) roi_size_label (magscope.ui.BeadSelectionPanel attribute) (magscope.ui.controls.BeadSelectionPanel attribute) (magscope.ui.controls.ZLUTGenerationPanel attribute) route_for() (magscope.ipc.CommandRegistry method) run() (magscope.processes.ManagerProcessBase method) (magscope.ui.plots.PlotWorker method) (magscope.ui.PlotWorker method) (magscope.videoprocessing.VideoWorker method) run_auto_bead_search_process() (in module magscope.auto_bead_selection) run_startup_splash() (in module magscope.startup_splash) running (magscope.ipc_commands.UpdateZLUTGenerationStateCommand attribute) RUNNING (magscope.scripting.ScriptStatus attribute) (magscope.utils.PoolVideoFlag attribute) S save_and_load_button (magscope.ui.controls.ZLUTGenerationDialog attribute) save_button (magscope.ui.controls.MagScopeSettingsPanel attribute) (magscope.ui.controls.ZLUTGenerationDialog attribute) (magscope.ui.MagScopeSettingsPanel attribute) save_generated_zlut() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) (magscope.zlut_generation.ZLUTGenerationManager method) save_layout() (magscope.ui.panel_layout.PanelLayoutManager method) save_to_qsettings() (magscope.settings.MagScopeSettings method) SaveGeneratedZLUTCommand (class in magscope.ipc_commands) scale_factor (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) scene (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) sceneClicked (magscope.ui.video_viewer.VideoViewer attribute) (magscope.ui.VideoViewer attribute) score (magscope.auto_bead_selection.AutoBeadCandidate attribute) Script (class in magscope.scripting) script_manager (magscope.scope.MagScope attribute) script_panel (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) script_registry (magscope.scripting.ScriptManager attribute) script_wait_until_acquisition_on() (magscope.videoprocessing.VideoProcessorManager method) ScriptCommandRegistration (class in magscope.scripting) ScriptManager (class in magscope.scripting) ScriptPanel (class in magscope.ui) (class in magscope.ui.controls) ScriptRegistry (class in magscope.scripting) ScriptStatus (class in magscope.scripting) ScriptStep (class in magscope.scripting) scrollContentsBy() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) search_cancel_button (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) search_progress_bar (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) search_progress_label (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) seed (magscope.ipc_commands.AddRandomBeadsCommand attribute) seed_roi (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog property) select_button (magscope.ui.controls.ZLUTPanel attribute) select_generated_bead() (magscope.zlut_generation.ZLUTGenerationManager method) select_generated_zlut_bead() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) selected_bead (magscope.ui.controls.PlotSettingsPanel attribute) (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotSettingsPanel attribute) (magscope.ui.PlotWorker attribute) (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) selected_bead_callback() (magscope.ui.controls.PlotSettingsPanel method) (magscope.ui.PlotSettingsPanel method) selected_bead_id (magscope.ipc_commands.UpdateZLUTGenerationEvaluationCommand attribute) selected_bead_label (magscope.ui.controls.ProfilePanel attribute) selected_bead_signal (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) SELECTED_PEN_WIDTH (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) SelectGeneratedZLUTBeadCommand (class in magscope.ipc_commands) selectionAccepted (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) send_ipc() (magscope.processes.ManagerProcessBase method) set_acquisition_dir() (magscope.processes.ManagerProcessBase method) (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) set_acquisition_dir_on() (magscope.processes.ManagerProcessBase method) (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) set_acquisition_mode() (magscope.processes.ManagerProcessBase method) (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) set_acquisition_on() (magscope.processes.ManagerProcessBase method) (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) set_axes() (magscope.ui.plots.TimeSeriesPlotBase method) (magscope.ui.TimeSeriesPlotBase method) set_bead_overlay() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) set_camera_setting() (magscope.camera.CameraManager method) set_cancel_callback() (magscope.ui.controls.ZLUTGenerationDialog method) set_close_callback() (magscope.ui.controls.ZLUTGenerationDialog method) set_drag_active() (magscope.ui.ui.AddColumnDropTarget method) set_filepath() (magscope.ui.controls.ZLUTPanel method) set_focus_offset() (magscope.camera.DummyCameraBeads method) set_highlighted() (magscope.ui.ControlPanelBase method) (magscope.ui.controls.ControlPanelBase method) set_image_to_default() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) set_live_profile_monitor_enabled() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) set_locks() (magscope.ui.plots.PlotWorker method) (magscope.ui.PlotWorker method) set_manager() (magscope.ui.panel_layout.ReorderableColumn method) set_parent() (magscope.ui.plots.TimeSeriesPlotBase method) (magscope.ui.TimeSeriesPlotBase method) set_pixmap() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) set_reference_bead() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) set_roi_bounds() (magscope.ui.BeadGraphic method) (magscope.ui.widgets.BeadGraphic method) set_save_and_load_callback() (magscope.ui.controls.ZLUTGenerationDialog method) set_save_callback() (magscope.ui.controls.ZLUTGenerationDialog method) set_select_bead_callback() (magscope.ui.controls.ZLUTGenerationDialog method) set_selected_bead() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) set_selection_state() (magscope.ui.BeadGraphic method) (magscope.ui.widgets.BeadGraphic method) set_setting() (magscope.camera.CameraBase method) (magscope.camera.DummyCameraBeads method) (magscope.camera.DummyCameraFastNoise method) (magscope.camera.DummyCameraNoise method) (magscope.python_microscope.PythonMicroscopeCamera method) set_settings() (magscope.processes.ManagerProcessBase method) (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) (magscope.videoprocessing.VideoProcessorManager method) set_simulated_focus() (magscope.camera.CameraManager method) set_state() (magscope.datatypes.ZLUTSweepDataset method) set_title() (magscope.ui.ControlPanelBase method) (magscope.ui.controls.ControlPanelBase method) set_verbose_logging() (magscope.scope.MagScope method) set_xy_lock_interval() (magscope.beadlock.BeadLockManager method) set_xy_lock_max() (magscope.beadlock.BeadLockManager method) set_xy_lock_on() (magscope.beadlock.BeadLockManager method) set_xy_lock_window() (magscope.beadlock.BeadLockManager method) set_z_lock_bead() (magscope.beadlock.BeadLockManager method) set_z_lock_interval() (magscope.beadlock.BeadLockManager method) set_z_lock_max() (magscope.beadlock.BeadLockManager method) set_z_lock_on() (magscope.beadlock.BeadLockManager method) set_z_lock_target() (magscope.beadlock.BeadLockManager method) set_z_lock_window() (magscope.beadlock.BeadLockManager method) SetAcquisitionDirCommand (class in magscope.ipc_commands) SetAcquisitionDirOnCommand (class in magscope.ipc_commands) SetAcquisitionModeCommand (class in magscope.ipc_commands) SetAcquisitionOnCommand (class in magscope.ipc_commands) SetCameraSettingCommand (class in magscope.ipc_commands) setContentLayout() (magscope.ui.CollapsibleGroupBox method) (magscope.ui.widgets.CollapsibleGroupBox method) setLayout() (magscope.ui.ControlPanelBase method) (magscope.ui.controls.ControlPanelBase method) SetSettingsCommand (class in magscope.ipc_commands) SetSimulatedFocusCommand (class in magscope.ipc_commands) setText() (magscope.ui.widgets.FlashLabel method) settings (magscope.camera.CameraBase attribute) (magscope.camera.DummyCameraBeads attribute) (magscope.camera.DummyCameraFastNoise attribute) (magscope.camera.DummyCameraNoise attribute) (magscope.ipc_commands.SetSettingsCommand attribute) (magscope.ipc_commands.UpdateSettingsCommand attribute) (magscope.processes.ManagerProcessBase attribute) (magscope.python_microscope.PythonMicroscopeCamera attribute) (magscope.scope.MagScope property) (magscope.ui.CameraPanel attribute) (magscope.ui.Controls property) (magscope.ui.controls.CameraPanel attribute) (magscope.ui.ui.Controls property) settings_key (magscope.ui.CollapsibleGroupBox property) (magscope.ui.widgets.CollapsibleGroupBox property) settings_map (magscope.python_microscope.PythonMicroscopeCamera attribute) settings_panel (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) SettingSpec (class in magscope.settings) setup() (magscope.beadlock.BeadLockManager method) (magscope.camera.CameraManager method) (magscope.hardware.FocusMotorBase method) (magscope.hardware.HardwareManagerBase method) (magscope.processes.ManagerProcessBase method) (magscope.scripting.ScriptManager method) (magscope.ui.plots.PlotWorker method) (magscope.ui.plots.TimeSeriesPlotBase method) (magscope.ui.plots.TracksTimeSeriesPlot method) (magscope.ui.PlotWorker method) (magscope.ui.TimeSeriesPlotBase method) (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) (magscope.videoprocessing.VideoProcessorManager method) (magscope.zlut_generation.ZLUTGenerationManager method) SetXYLockIntervalCommand (class in magscope.ipc_commands) SetXYLockMaxCommand (class in magscope.ipc_commands) SetXYLockOnCommand (class in magscope.ipc_commands) SetXYLockWindowCommand (class in magscope.ipc_commands) SetZLockBeadCommand (class in magscope.ipc_commands) SetZLockIntervalCommand (class in magscope.ipc_commands) SetZLockMaxCommand (class in magscope.ipc_commands) SetZLockOnCommand (class in magscope.ipc_commands) SetZLockTargetCommand (class in magscope.ipc_commands) SetZLockWindowCommand (class in magscope.ipc_commands) shape (magscope.datatypes.LiveProfileBuffer property) shared_values (magscope.camera.CameraBase attribute) (magscope.processes.ManagerProcessBase attribute) (magscope.scope.MagScope attribute) show_error() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) show_warning() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) show_zlut_generation_dialog() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) ShowErrorCommand (class in magscope.ipc_commands) showEvent() (magscope.ui.GripSplitter method) (magscope.ui.widgets.GripSplitter method) ShowMessageCommand (class in magscope.ipc_commands) shown_once (magscope.ui.GripSplitter attribute) (magscope.ui.widgets.GripSplitter attribute) shutdown() (magscope.python_microscope.PythonMicroscopeCamera method) (magscope.ui.auto_bead_selection_dialog._AutoBeadSearchProcessBackend method) SingletonABCMeta (class in magscope.processes) SingletonMeta (class in magscope.processes) sizeHint() (magscope.ui.controls.ResponsivePlotCanvas method) SleepCommand (class in magscope.ipc_commands) SLIDER_STEPS (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) spec_for() (magscope.settings.MagScopeSettings class method) stack_shape (magscope.datatypes.VideoBuffer attribute) stack_size (magscope.datatypes.VideoBuffer attribute) start() (magscope.scope.MagScope method) start_auto_bead_selection() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) start_button (magscope.ui.controls.ScriptPanel attribute) (magscope.ui.ScriptPanel attribute) start_drag() (magscope.ui.panel_layout.PanelWrapper method) start_generation() (magscope.zlut_generation.ZLUTGenerationManager method) start_input (magscope.ui.controls.ZLUTGenerationPanel attribute) start_nm (magscope.ipc_commands.StartZLUTGenerationCommand attribute) start_script() (magscope.scripting.ScriptManager method) start_search() (magscope.ui.auto_bead_selection_dialog._AutoBeadSearchProcessBackend method) start_sleep() (magscope.scripting.ScriptManager method) start_zlut_generation() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) StartScriptCommand (class in magscope.ipc_commands) startup_ready() (magscope.scope.MagScope method) StartupReadyCommand (class in magscope.ipc_commands) StartZLUTGenerationCommand (class in magscope.ipc_commands) state (magscope.datatypes.ZLUTSweepDataset property) STATE_ABSENT (magscope.datatypes.ZLUTSweepDataset attribute) STATE_CAPTURING (magscope.datatypes.ZLUTSweepDataset attribute) STATE_COMPLETE (magscope.datatypes.ZLUTSweepDataset attribute) STATE_CREATING (magscope.datatypes.ZLUTSweepDataset attribute) STATE_DESTROYED (magscope.datatypes.ZLUTSweepDataset attribute) STATE_DETACHING (magscope.datatypes.ZLUTSweepDataset attribute) STATE_FAILED (magscope.datatypes.ZLUTSweepDataset attribute) STATE_READY (magscope.datatypes.ZLUTSweepDataset attribute) status (magscope.ipc_commands.UpdateScriptStatusCommand attribute) (magscope.ipc_commands.UpdateZLUTGenerationStateCommand attribute) status_label (magscope.ui.AllanDeviationPanel attribute) (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) (magscope.ui.controls.AllanDeviationPanel attribute) (magscope.ui.controls.MagScopeSettingsPanel attribute) (magscope.ui.controls.ScriptPanel attribute) (magscope.ui.controls.TrackingOptionsPanel attribute) (magscope.ui.controls.ZLUTGenerationDialog attribute) (magscope.ui.MagScopeSettingsPanel attribute) (magscope.ui.ScriptPanel attribute) (magscope.ui.TrackingOptionsPanel attribute) status_panel (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) status_prefix (magscope.ui.controls.ScriptPanel attribute) (magscope.ui.ScriptPanel attribute) StatusPanel (class in magscope.ui) (class in magscope.ui.controls) step_1_body_label (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) step_1_card (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) step_1_title_label (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) step_2_body_label (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) step_2_card (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) step_2_title_label (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) step_description_label (magscope.ui.controls.ScriptPanel attribute) (magscope.ui.ScriptPanel attribute) step_index (magscope.ipc_commands.ArmZLUTSweepCaptureCommand attribute) (magscope.ipc_commands.ZLUTSweepCaptureCompleteCommand attribute) step_input (magscope.ui.controls.ZLUTGenerationPanel attribute) step_nm (magscope.ipc_commands.StartZLUTGenerationCommand attribute) step_position_label (magscope.ui.controls.ScriptPanel attribute) (magscope.ui.ScriptPanel attribute) step_size (magscope.ipc_commands.UpdateZLUTMetadataCommand attribute) step_value (magscope.ui.controls.ZLUTPanel attribute) steps (magscope.scripting.Script attribute) stop() (magscope.scope.MagScope method) stop_input (magscope.ui.controls.ZLUTGenerationPanel attribute) stop_nm (magscope.ipc_commands.StartZLUTGenerationCommand attribute) stop_signal (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) stored_column_names() (magscope.ui.panel_layout.PanelLayoutManager method) stored_layout() (magscope.ui.panel_layout.PanelLayoutManager method) strides (magscope.datatypes.MatrixBuffer attribute) summary_label (magscope.ui.controls.ZLUTSweepPreviewWidget attribute) T t (magscope.ipc_commands.UpdateVideoBufferPurgeCommand attribute) target (magscope.ipc.CommandSpec attribute) (magscope.ui.controls.ZLockPanel attribute) (magscope.ui.panel_layout._TitleDragFilter attribute) target_callback() (magscope.ui.controls.ZLockPanel method) target_override (magscope.ipc.HandlerRegistration attribute) taus_mode (magscope.ui.AllanDeviationPanel attribute) (magscope.ui.controls.AllanDeviationPanel attribute) text (magscope.ipc_commands.ShowErrorCommand attribute) (magscope.ipc_commands.ShowMessageCommand attribute) threshold_slider (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) threshold_value_label (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) time_inputs_stack (magscope.ui.controls.PlotSettingsPanel attribute) (magscope.ui.PlotSettingsPanel attribute) time_label (magscope.ui.controls.PlotSettingsPanel attribute) (magscope.ui.PlotSettingsPanel attribute) time_limits_absolute (magscope.ui.controls.PlotSettingsPanel attribute) (magscope.ui.PlotSettingsPanel attribute) time_mode (magscope.ui.controls.PlotSettingsPanel attribute) (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotSettingsPanel attribute) (magscope.ui.PlotWorker attribute) time_mode_callback() (magscope.ui.controls.PlotSettingsPanel method) (magscope.ui.PlotSettingsPanel method) time_mode_signal (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) time_relative_window (magscope.ui.controls.PlotSettingsPanel attribute) (magscope.ui.PlotSettingsPanel attribute) TimeSeriesPlotBase (class in magscope.ui) (class in magscope.ui.plots) title (magscope.ui.CollapsibleGroupBox attribute) (magscope.ui.widgets.CollapsibleGroupBox attribute) title_label (magscope.ui.controls.HelpPanel attribute) (magscope.ui.controls.ResetPanel attribute) to_dict() (magscope.settings.MagScopeSettings method) toggle() (magscope.ui.CollapsibleGroupBox method) (magscope.ui.widgets.CollapsibleGroupBox method) toggle_button (magscope.ui.CollapsibleGroupBox attribute) (magscope.ui.widgets.CollapsibleGroupBox attribute) toggle_drag_mode() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) total_steps (magscope.ipc_commands.UpdateScriptStepCommand attribute) (magscope.ipc_commands.UpdateZLUTGenerationProgressCommand attribute) TRACK (magscope.utils.AcquisitionMode attribute) TRACK_AND_CROP_VIDEO (magscope.utils.AcquisitionMode attribute) TRACK_AND_FULL_VIDEO (magscope.utils.AcquisitionMode attribute) tracking_options_panel (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) TrackingOptionsPanel (class in magscope.ui) (class in magscope.ui.controls) tracks_buffer (magscope.processes.ManagerProcessBase attribute) (magscope.scope.MagScope attribute) TracksTimeSeriesPlot (class in magscope.ui.plots) U ui_manager (magscope.scope.MagScope attribute) UIManager (class in magscope.ui) (class in magscope.ui.ui) um (magscope.utils.Units attribute) uN (magscope.utils.Units attribute) Units (class in magscope.utils) UnknownCommandError unload_zlut() (magscope.videoprocessing.VideoProcessorManager method) UnloadZLUTCommand (class in magscope.ipc_commands) update() (magscope.settings.MagScopeSettings method) (magscope.ui.plots.TimeSeriesPlotBase method) (magscope.ui.plots.TracksTimeSeriesPlot method) (magscope.ui.TimeSeriesPlotBase method) update_bead() (magscope.ui.controls.ZLockPanel method) update_bead_rois() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_beads() (magscope.datatypes.BeadRoiBuffer method) update_camera_setting() (magscope.ui.CameraPanel method) (magscope.ui.controls.CameraPanel method) (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_coordinates() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) update_display_rate() (magscope.ui.controls.StatusPanel method) (magscope.ui.StatusPanel method) update_enabled() (magscope.ui.controls.XYLockPanel method) (magscope.ui.controls.ZLockPanel method) update_evaluation() (magscope.ui.controls.ZLUTGenerationDialog method) update_interval (magscope.ui.controls.HistogramPanel attribute) (magscope.ui.HistogramPanel attribute) update_interval() (magscope.ui.controls.XYLockPanel method) (magscope.ui.controls.ZLockPanel method) update_max() (magscope.ui.controls.XYLockPanel method) (magscope.ui.controls.ZLockPanel method) update_metadata() (magscope.ui.controls.ZLUTPanel method) update_next_bead_id_label() (magscope.ui.BeadSelectionPanel method) (magscope.ui.controls.BeadSelectionPanel method) update_on (magscope.ui.plots.PlotWorker attribute) (magscope.ui.PlotWorker attribute) update_plot() (magscope.ui.controls.HistogramPanel method) (magscope.ui.controls.ProfilePanel method) (magscope.ui.HistogramPanel method) update_plot_figure_size() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_preview() (magscope.ui.controls.ZLUTSweepPreviewWidget method) update_progress() (magscope.ui.controls.ZLUTGenerationDialog method) (magscope.ui.controls.ZLUTGenerationPanel method) update_save_highlight() (magscope.ui.AcquisitionPanel method) (magscope.ui.controls.AcquisitionPanel method) update_script_status() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_script_step() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_settings() (magscope.scope.MagScope method) update_state() (magscope.ui.controls.ZLUTGenerationDialog method) (magscope.ui.controls.ZLUTGenerationPanel method) update_status() (magscope.ui.controls.ScriptPanel method) (magscope.ui.ScriptPanel method) update_step() (magscope.ui.controls.ScriptPanel method) (magscope.ui.ScriptPanel method) update_target() (magscope.ui.controls.ZLockPanel method) update_tracking_options() (magscope.videoprocessing.VideoProcessorManager method) update_video_buffer_purge() (magscope.ui.controls.StatusPanel method) (magscope.ui.StatusPanel method) (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_video_buffer_status() (magscope.ui.controls.StatusPanel method) (magscope.ui.StatusPanel method) (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_video_processors_status() (magscope.ui.controls.StatusPanel method) (magscope.ui.StatusPanel method) (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_view_coords() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_waiting() (magscope.scripting.ScriptManager method) update_window() (magscope.ui.controls.XYLockPanel method) (magscope.ui.controls.ZLockPanel method) update_xy_lock_enabled() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_xy_lock_interval() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_xy_lock_max() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_xy_lock_window() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_z_lock_bead() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_z_lock_enabled() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_z_lock_interval() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_z_lock_max() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_z_lock_target() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_z_lock_window() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_zlut_generation_evaluation() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_zlut_generation_progress() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_zlut_generation_state() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) update_zlut_metadata() (magscope.ui.ui.UIManager method) (magscope.ui.UIManager method) UpdateBeadRoisCommand (class in magscope.ipc_commands) UpdateCameraSettingCommand (class in magscope.ipc_commands) UpdateScriptStatusCommand (class in magscope.ipc_commands) UpdateScriptStepCommand (class in magscope.ipc_commands) UpdateSettingsCommand (class in magscope.ipc_commands) UpdateTrackingOptionsCommand (class in magscope.ipc_commands) UpdateVideoBufferPurgeCommand (class in magscope.ipc_commands) UpdateWaitingCommand (class in magscope.ipc_commands) UpdateXYLockEnabledCommand (class in magscope.ipc_commands) UpdateXYLockIntervalCommand (class in magscope.ipc_commands) UpdateXYLockMaxCommand (class in magscope.ipc_commands) UpdateXYLockWindowCommand (class in magscope.ipc_commands) UpdateZLockBeadCommand (class in magscope.ipc_commands) UpdateZLockEnabledCommand (class in magscope.ipc_commands) UpdateZLockIntervalCommand (class in magscope.ipc_commands) UpdateZLockMaxCommand (class in magscope.ipc_commands) UpdateZLockTargetCommand (class in magscope.ipc_commands) UpdateZLockWindowCommand (class in magscope.ipc_commands) UpdateZLUTGenerationEvaluationCommand (class in magscope.ipc_commands) UpdateZLUTGenerationProgressCommand (class in magscope.ipc_commands) UpdateZLUTGenerationStateCommand (class in magscope.ipc_commands) UpdateZLUTMetadataCommand (class in magscope.ipc_commands) us (magscope.utils.Units attribute) use_fft (magscope.ui.controls.TrackingOptionsPanel attribute) (magscope.ui.TrackingOptionsPanel attribute) V validate_move() (magscope.ui.BeadGraphic method) (magscope.ui.widgets.BeadGraphic method) validate_targets() (magscope.ipc.CommandRegistry method) value (magscope.ipc_commands.SetAcquisitionDirCommand attribute) (magscope.ipc_commands.SetAcquisitionDirOnCommand attribute) (magscope.ipc_commands.SetAcquisitionOnCommand attribute) (magscope.ipc_commands.SetCameraSettingCommand attribute) (magscope.ipc_commands.SetXYLockIntervalCommand attribute) (magscope.ipc_commands.SetXYLockMaxCommand attribute) (magscope.ipc_commands.SetXYLockOnCommand attribute) (magscope.ipc_commands.SetXYLockWindowCommand attribute) (magscope.ipc_commands.SetZLockBeadCommand attribute) (magscope.ipc_commands.SetZLockIntervalCommand attribute) (magscope.ipc_commands.SetZLockMaxCommand attribute) (magscope.ipc_commands.SetZLockOnCommand attribute) (magscope.ipc_commands.SetZLockTargetCommand attribute) (magscope.ipc_commands.SetZLockWindowCommand attribute) (magscope.ipc_commands.UpdateCameraSettingCommand attribute) (magscope.ipc_commands.UpdateTrackingOptionsCommand attribute) (magscope.ipc_commands.UpdateXYLockEnabledCommand attribute) (magscope.ipc_commands.UpdateXYLockIntervalCommand attribute) (magscope.ipc_commands.UpdateXYLockMaxCommand attribute) (magscope.ipc_commands.UpdateXYLockWindowCommand attribute) (magscope.ipc_commands.UpdateZLockBeadCommand attribute) (magscope.ipc_commands.UpdateZLockEnabledCommand attribute) (magscope.ipc_commands.UpdateZLockIntervalCommand attribute) (magscope.ipc_commands.UpdateZLockMaxCommand attribute) (magscope.ipc_commands.UpdateZLockTargetCommand attribute) (magscope.ipc_commands.UpdateZLockWindowCommand attribute) (magscope.ipc_commands.WaitUntilAcquisitionOnCommand attribute) value_label (magscope.ui.LabeledLineEditWithValue attribute) (magscope.ui.widgets.LabeledLineEditWithValue attribute) value_type (magscope.settings.SettingSpec attribute) ValueTypeUI8 (in module magscope.processes) (in module magscope.videoprocessing) version (magscope.datatypes.BeadRoiBuffer property) video_buffer (magscope.camera.CameraBase attribute) (magscope.processes.ManagerProcessBase attribute) (magscope.scope.MagScope attribute) video_buffer_purge_label (magscope.ui.controls.StatusPanel attribute) (magscope.ui.StatusPanel attribute) video_buffer_size_status (magscope.ui.controls.StatusPanel attribute) (magscope.ui.StatusPanel attribute) video_buffer_status (magscope.ui.controls.StatusPanel attribute) (magscope.ui.StatusPanel attribute) video_buffer_status_bar (magscope.ui.controls.StatusPanel attribute) (magscope.ui.StatusPanel attribute) video_process_busy_count (magscope.processes.InterprocessValues attribute) video_process_completed_stacks (magscope.processes.InterprocessValues attribute) video_process_reserved_stacks (magscope.processes.InterprocessValues attribute) video_processor_manager (magscope.scope.MagScope attribute) video_processors_status (magscope.ui.controls.StatusPanel attribute) (magscope.ui.StatusPanel attribute) video_viewer (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog attribute) (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) VideoBuffer (class in magscope.datatypes) VideoProcessorManager (class in magscope.videoprocessing) VideoViewer (class in magscope.ui) (class in magscope.ui.video_viewer) VideoWorker (class in magscope.videoprocessing) view_scene (magscope.ui.BeadGraphic attribute) (magscope.ui.widgets.BeadGraphic attribute) visible_candidates (magscope.ui.auto_bead_selection_dialog.AutoBeadSelectionDialog property) W wait (magscope.scripting.ScriptStep attribute) WaitUntilAcquisitionOnCommand (class in magscope.ipc_commands) wheelEvent() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) width (magscope.camera.CameraBase attribute) (magscope.camera.DummyCameraBeads attribute) (magscope.camera.DummyCameraFastNoise attribute) (magscope.camera.DummyCameraNoise attribute) (magscope.python_microscope.PythonMicroscopeCamera attribute) window (magscope.ui.controls.XYLockPanel attribute) (magscope.ui.controls.ZLockPanel attribute) window_callback() (magscope.ui.controls.XYLockPanel method) (magscope.ui.controls.ZLockPanel method) windows (magscope.ui.ui.UIManager attribute) (magscope.ui.UIManager attribute) wrapper_for_id() (magscope.ui.panel_layout.PanelLayoutManager method) write() (magscope.datatypes.MatrixBuffer method) (magscope.datatypes.ZLUTSweepDataset method) write_image_and_timestamp() (magscope.datatypes.VideoBuffer method) write_profile() (magscope.datatypes.LiveProfileBuffer method) write_timestamp() (magscope.datatypes.VideoBuffer method) written_count (magscope.ipc_commands.ZLUTSweepCaptureCompleteCommand attribute) written_profiles_per_bead (magscope.ipc_commands.ZLUTSweepCaptureCompleteCommand attribute) X xy_lock_interval (magscope.beadlock.BeadLockManager attribute) xy_lock_max (magscope.beadlock.BeadLockManager attribute) xy_lock_on (magscope.beadlock.BeadLockManager attribute) xy_lock_panel (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) xy_lock_window (magscope.beadlock.BeadLockManager attribute) XYLockPanel (class in magscope.ui.controls) Y ylabel (magscope.ui.plots.TimeSeriesPlotBase attribute) (magscope.ui.TimeSeriesPlotBase attribute) Z z (magscope.ipc_commands.MoveFocusMotorAbsoluteCommand attribute) z_axis_descending (magscope.ipc_commands.UpdateZLUTGenerationStateCommand attribute) z_axis_max_nm (magscope.ipc_commands.UpdateZLUTGenerationStateCommand attribute) z_axis_min_nm (magscope.ipc_commands.UpdateZLUTGenerationStateCommand attribute) z_lock_bead (magscope.beadlock.BeadLockManager attribute) z_lock_interval (magscope.beadlock.BeadLockManager attribute) z_lock_max (magscope.beadlock.BeadLockManager attribute) z_lock_on (magscope.beadlock.BeadLockManager attribute) z_lock_panel (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) z_lock_target (magscope.beadlock.BeadLockManager attribute) z_lock_window (magscope.beadlock.BeadLockManager attribute) z_lut_generation_panel (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) z_max (magscope.ipc_commands.ReportFocusMotorLimitsCommand attribute) (magscope.ipc_commands.UpdateZLUTMetadataCommand attribute) z_min (magscope.ipc_commands.ReportFocusMotorLimitsCommand attribute) (magscope.ipc_commands.UpdateZLUTMetadataCommand attribute) ZLockPanel (class in magscope.ui.controls) zlut_array (magscope.zlut_generation.GeneratedZLUTResult attribute) zlut_clear_requested (magscope.ui.controls.ZLUTPanel attribute) zlut_file_selected (magscope.ui.controls.ZLUTPanel attribute) zlut_generation_manager (magscope.scope.MagScope attribute) zlut_panel (magscope.ui.Controls attribute) (magscope.ui.ui.Controls attribute) ZLUTGenerationDialog (class in magscope.ui.controls) ZLUTGenerationManager (class in magscope.zlut_generation) ZLUTGenerationPanel (class in magscope.ui.controls) ZLUTPanel (class in magscope.ui.controls) ZLUTSweepCaptureCompleteCommand (class in magscope.ipc_commands) ZLUTSweepDataset (class in magscope.datatypes) ZLUTSweepPreviewWidget (class in magscope.ui.controls) zoom() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method) zoom_level() (magscope.ui.video_viewer.VideoViewer method) (magscope.ui.VideoViewer method)
